Gene Ppha_0181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0181 
Symbol 
ID6462594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand+ 
Start bp177788 
End bp178441 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content52% 
IMG OID642726476 
Productprotein of unknown function DUF1016 
Protein accessionYP_002017136 
Protein GI194335342 
COG category[S] Function unknown 
COG ID[COG4804] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0489456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGAGC ATGATCGGAG CCTCTCGGTG AATATCGATG TGTTGCTTGC TCAGTTGCGT 
ACTCTGATTG CTGATGCTCG CAAAGATGCA AAGCGGACAG TGGATGTTAT TCAGGTGCGT 
ACCTGCTGGG AAATTGGTCG TCATATCGTG GAGTTTGAGC AAGGAGGGCA GGCACGCGCT 
GCTTATGGCA AAAAGCTGCT GTCTCGACTG GCAGAATCAT TGACTGGTGA GTTTGGCAAG 
GGGTTTGATG CCACTAATTT GCGGCACATG CGCCGGTTTT ATCTTGCTTT TCCAATTTGC 
GACACAGTGC GTCGCGAATT GAGCTGGTCG CATTATCGGG CACTGTTGCG TGTTGATAAC 
CCCGAAGCAA GGCTTTGGTA CGTGAATGAA GCAGCAGCGC AGAACTGGAG TTTTCGCGCA 
CTCGATCGGC AGATTGGCAC ATTGTACTAT GAGCGATTGC TGCTCAGCAA TGACAAGGCC 
AGCGTGGAGG CTGAAGCCGA AGCCAATATC GCAGCACTGC CTCGTAGCCC CCGTGAGTTC 
GTGCGCGATC CTGTGATGCT CGAGTTTCTT GGCCTGCCTG GCACAGGCAA GCTGCTGGAG 
TCAAAGCTGG AGCAGGCACT GATGGATGTT GTTAGCTCAA TGGCAAAGTA TTAG
 
Protein sequence
MNEHDRSLSV NIDVLLAQLR TLIADARKDA KRTVDVIQVR TCWEIGRHIV EFEQGGQARA 
AYGKKLLSRL AESLTGEFGK GFDATNLRHM RRFYLAFPIC DTVRRELSWS HYRALLRVDN 
PEARLWYVNE AAAQNWSFRA LDRQIGTLYY ERLLLSNDKA SVEAEAEANI AALPRSPREF 
VRDPVMLEFL GLPGTGKLLE SKLEQALMDV VSSMAKY