Gene Ppha_0013 details

Gene Information

• Locus tag: Ppha_0013
• Symbol: secD
• ID: 6462790
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelodictyon phaeoclathratiforme BU-1
• Kingdom: Bacteria
• Replicon accession: NC_011060
• Strand: +
• Start bp: 13137
• End bp: 15011
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 642726317
• Product: preprotein translocase subunit SecD
• Protein accession: YP_002016989
• Protein GI: 194335195
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.295061
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCATCAA TGAAAAATAA ACGTTTTAAC CTTCTTCTTA TTGCCGTTGT CACTCTTATG 
GCTCTCTGGT CATTATGGCC AACCTGGAGT GACTACACTC TTTCGAAGCA GCTCGATTCT 
TTTGCTTCAG CGCAGGATAG TCTGAAATAT GTACTGAATC ACCGCGAAGA GCTTGAAAAC 
GCCCGCAAAA AGAGTCTGAA ACTCGGTCTG GATCTGAAGG GCGGGATGCA TCTGGTTATG 
GAGGTTGATC AGGTGGATCT TTTTGAACAG AAAGCATGGA ATAAGGATGG GAAGTTTACT 
GCCATCATGC AGAATGTTCG GACAAAAGCA TCGCAAAGTG ATGCAAAGGT TATTGATCTT 
ATCTCCTCCG AGTTCAAGAG TCAGAATATT CGCCTGAGCC GATATTTCTA TGATATCCGC 
AATTCAGATC AGGAAATTGT TTCGAAACTG GAAAAAGAGT CTGAAGATGC CCTGAACCGT 
GCCAAGGAGA TTATCCGCAA TCGTATTGAT CAATATGGTG TTGCCGAACC AGTCATTACG 
ACACAGGGAA GCAGGAAAAT CATTATTGAG CTTCCTGGTG TTTCAGATGA AAACAGGGTG 
AGAAACTTGC TCAAAGGGAC GGCAAAACTT GAATTCAGAC TTCTTCGTGA ACCTGAAGTG 
ATGGTCAGGA CGCTGGACAG AATCAACTCA TATCTTGTTC AAAACCAACA GAATAGTGCC 
GCAGTACAGG TTGCTCCCGT TCCTGACTCA TCATCAGCCG CCTTGCCGGC GCCTGTTGCG 
CTCTCCGTGC CCAAACCTGT GGCGCCCGTT GCTCCGCAGT CATCTGCAAC ACCGCTTTAT 
GATGTGATTG GTGTTTTTCA AAATGGTACC GCATTTACAA CCGAGCAGTC GAAGGAGTAT 
GTTGTATCGC TGTTGCACCG CAGTGACATC GTGGCATTAT TCCCTCCGGA TAGTGAGTTA 
CTGCTTGCAG CCAAGCCCGA TGTGGGCAAA AATGGAGAAA AGCTCTATTC CATCTATCTG 
GTCAGAAAGG GGCCTGAGCT GACAGGTGGT GTTATTACAG AGGCAAAAGC CACTTTCGGC 
TCAGAGGGTG TGCAGCCTGA GGTTTTGATG TCGATGAATT CCGAAGGGAC GTCAAAATGG 
GCTCGTATTA CGGGAGCCAA TATCGGCAAG CGCATTGCAA TTGTGCTGGA TGGAGCTGTC 
TACAGCGCTC CTGTTGTGCA GTCAAAGATT CCAAACGGTA ATTCAGTGAT CAACGGGATT 
GAAAGTCTTG AAGAGGCGAA AGATCTTGAA ATTGTCCTTA AAGCGGGCGC TCTTCCTGCT 
CCTGTCCGCA TTATTGAAGA GAGGACGGTT GGGCCATCAC TCGGCGCTGA TTATATTCGC 
GCCGGAATGC AGTCCATTAT CTGGGGTTTT GTGGCTGTGG CTGTTTTTAT GGTGGTTTAT 
TACCGGCAGG CGGGAATCGC TGCCGATGTA GCTGTGGTGC TTAACATCCT TATTGTACTC 
TCGGTGCTTG CAGGTTTTAA TGCATCGCTT TCACTTCCGG GTATTGCCGG GATTGTGCTG 
ACCATGGGAA TGGCGGTTGA TGCGAATGTT CTGATCTACG AACGGATACG TGAAGAGCTT 
GCTGAAGGCA AGTCGGTTAT CACTGCCGTG ACGCAAGGTT ATGAACGGGC ATTTTCCTCG 
ATTCTTGATT CACATGTGAC AACCCTCTCA GCGGCATTTC TGCTGTATAC GTATGGTATC 
GGACCTATTC AGGGGTTTGC TGTAACATTG ATGATCGGTA CCTCGGCAAG CTTGTTTACG 
GCCATTGTGG TGACCAGAGA GATCTTCCAT CTGTTGTTCA TCAAAAATCT TATGTCAGAC 
AAAAGTTTCG GTTAA 

 

Protein sequence

MPSMKNKRFN LLLIAVVTLM ALWSLWPTWS DYTLSKQLDS FASAQDSLKY VLNHREELEN 
ARKKSLKLGL DLKGGMHLVM EVDQVDLFEQ KAWNKDGKFT AIMQNVRTKA SQSDAKVIDL 
ISSEFKSQNI RLSRYFYDIR NSDQEIVSKL EKESEDALNR AKEIIRNRID QYGVAEPVIT 
TQGSRKIIIE LPGVSDENRV RNLLKGTAKL EFRLLREPEV MVRTLDRINS YLVQNQQNSA 
AVQVAPVPDS SSAALPAPVA LSVPKPVAPV APQSSATPLY DVIGVFQNGT AFTTEQSKEY 
VVSLLHRSDI VALFPPDSEL LLAAKPDVGK NGEKLYSIYL VRKGPELTGG VITEAKATFG 
SEGVQPEVLM SMNSEGTSKW ARITGANIGK RIAIVLDGAV YSAPVVQSKI PNGNSVINGI 
ESLEEAKDLE IVLKAGALPA PVRIIEERTV GPSLGADYIR AGMQSIIWGF VAVAVFMVVY 
YRQAGIAADV AVVLNILIVL SVLAGFNASL SLPGIAGIVL TMGMAVDANV LIYERIREEL 
AEGKSVITAV TQGYERAFSS ILDSHVTTLS AAFLLYTYGI GPIQGFAVTL MIGTSASLFT 
AIVVTREIFH LLFIKNLMSD KSFG