Gene Pnuc_2009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_2009 
Symbol 
ID5052144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp2081288 
End bp2082535 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content46% 
IMG OID640472183 
Productmajor facilitator transporter 
Protein accessionYP_001156784 
Protein GI145590187 
COG category 
COG ID 
TIGRFAM ID[TIGR00901] AmpG-related permease 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.872827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCTTTT TGGGTTTCTC TGCTGGCTTA CCACTCTTAT TAATTCTGGG AACTTTGAGC 
TTTTGGCTTA GAGAGGCGGG GATTGATCGG AGCACGATTG GCTATCTCAC TTGGGTTGGA 
TTGATTTATG CCTTTAAGTG GGTTTGGGCG CCTTTAGTTG ATCGTTTAAA AATTCCTTTT 
CTCACCAAGC TCTTGGGTCG CAGAAGAAGT TGGTTGATCT TTGCCCAGGC CCTCATCATT 
TTGGGTTTGG TCAGTATGTC TACGATGGAT CCAAAGTTGG CTCTCAACTC GGTGGTCTGG 
TGTGCCTTAC TCGTTGCTTT TGGTTCTGCT ACTCAAGACA TTGCATTGGA TGCTTTCCGA 
ATCGAATCGG CCAATAGTGA TCATCAAGCC GCTTTAGCCG CAACCTATCA AACAGGATAT 
CGACTGGCTT TAATTTGGGC GGGTGCCGGT GTTTTATGGC TCGCCGCACG AGTTGAGACT 
GGCGGTGGTT ACGATGCGAG TGCCTGGCAA TTTGCTTATT TATGCATGGC TGGATCAATC 
GGGGTTGGGG TCTTAACAAC CCTGTTTAGT AAAGAGCCAG TTCAATATGA GTTAGCAAAA 
GCGCGCAATG CCAAAGCATG GCTCTATCAA ACATTGGTTG AGCCCTTCGC TGAATTTATT 
CAGCGCTACC GCTGGCACGC CGTTTTGATT TTGTCTTTGA TTGCTATTTA CCGAATTAGC 
GATGTGGTGA TGGGCATTAT GGCGAACCCG TTCTATGTAG ACATGGGCTA TACCAAGGAT 
GAAGTCGCCG CAGTCAGCAA AGTATTTGGC GTGGTGATGA CTTTAGTCGG AGCCTTTGTA 
GGTGGTGTAC TTACTTTACG CTTTGGTGTA TTAAGAATCT TATTTGTTGG CGCCATTCTT 
TCAGCGGTCA GCAATTTATT GTTTGCATGG CTAGCAACCC AGGGCCATGA TTTACATGGT 
TTGATTTGGG TTATCTCTGC GGACAATCTC AGCTCAGGTA TTGCTAGCGC AGCCTTTATA 
GCGTTCTTGT CATCTCTTAC CAATATTCGG TATTCAGCAA CGCAATATGC CTTGTTTAGC 
TCGATGATGT TGCTGTTGCC AAAATGGCTA GCGGGCTTCT CAGGGGTGTT CGTAGATAAC 
TATGGTTATC AGACTTTTTT CTACGGTACA GCGATTATTG GCGCCCCCGT CTTGGTATTA 
ATTTGGCTCA CAATCCATTT CAAGATCGTT CAAATCAAGC AAGATTAA
 
Protein sequence
MLFLGFSAGL PLLLILGTLS FWLREAGIDR STIGYLTWVG LIYAFKWVWA PLVDRLKIPF 
LTKLLGRRRS WLIFAQALII LGLVSMSTMD PKLALNSVVW CALLVAFGSA TQDIALDAFR 
IESANSDHQA ALAATYQTGY RLALIWAGAG VLWLAARVET GGGYDASAWQ FAYLCMAGSI 
GVGVLTTLFS KEPVQYELAK ARNAKAWLYQ TLVEPFAEFI QRYRWHAVLI LSLIAIYRIS 
DVVMGIMANP FYVDMGYTKD EVAAVSKVFG VVMTLVGAFV GGVLTLRFGV LRILFVGAIL 
SAVSNLLFAW LATQGHDLHG LIWVISADNL SSGIASAAFI AFLSSLTNIR YSATQYALFS 
SMMLLLPKWL AGFSGVFVDN YGYQTFFYGT AIIGAPVLVL IWLTIHFKIV QIKQD