Gene Pnuc_1445 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1445 
Symbol 
ID5052418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1516465 
End bp1517649 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content49% 
IMG OID640471617 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_001156223 
Protein GI145589626 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGATGC GGCAGGTTGC CATACTCGGC TCAACGGGCT CTATTGGGGT CAACACCTTG 
GATGTCATTC GTGCTCATCC TGCTCGTTTT AATGTAGTTG CCCTTACGGC TGGAAAGCAA 
ATCGAGCTCT TGGCTCAGCA ATGTGTTGAA TTTAAACCCA TGATTGCGGT TGTTAGCGAA 
GCGGGGGATG CTGCTCGCCT GGAGAAGATG CTGCTTGAGC AGGGGGTTTC TACGCAAGTG 
ATGTATGGTC CAGATGCCTT AGTGAGCGCT GTTACTGAGT CGTCTTGCGA TACGGTAATG 
GCAGCTATAG TCGGGGCAGC TGGGTTGGTG CCAGCATTGG CTGCAGCAAA AGCAGGTAAG 
CGAGTTTTGC TGGCCAATAA AGAAGCTTTG GTGATGTCGG GCAATTTATT TATGCAAGCC 
ATGAAAAGTG GCGGTGGTGA GTTACTTCCG ATTGATAGCG AACATAATGC GATCTTTCAA 
TGCCTGCCAA ATGAATTTAC TAAGTCAACG CACAATGGTC TTGGCGTTGA GGAGCTGTGG 
TTAACTGCTT CAGGTGGACC ATTTCGCAGT ACGCCTATTG AACAGCTGGC GGCCATTACT 
CCAGAGCAGG CTTGCGCTCA TCCCAATTGG GTAATGGGCA GAAAAATTTC CGTTGATTCA 
GCAACCATGA TGAACAAAGG CCTTGAAGTG ATTGAAGCTT TTTGGTTGTT TGGTTTGCCA 
CTTGAAAAAA TTAAAGTATT AATTCATCCA CAAAGCGTGG TGCATTCAAT GGTGCGTTAT 
CGTGACGGCT CAGTATTGGC GCAATTAGGA CAACCTGATA TGCGCACTCC TATTGCCTAT 
GGGCTAGCTT GGCCAGAGCG TATTGAGGCC GGGGTTGCCC CATTAGATTT AGCGCAGTTG 
GCGGCCCTGA ATTTTTCAGA GCCTGAATTA GCGCGCTTCC CATGCCTCTC TCTTGCGTTT 
GCGGCAGCCA AAGCTGGCGG TACTGCTCCG GCAGTACTTA ATGCCGCGAA TGAAGTGGCA 
GTAGCCGCTT TCTTGGATGC TGGTTTACCG TATTTGCAAA TACCTCAAGT GGTTGAGAAA 
ACCCTAGATG CAATTGCTGT CACCAATGCG GATTCGTTAG AAACCATCTT GGCTATTGAT 
GCTCAAGCCA GATCAGTGGC TCATGACTTG ATGCGTCAGT ATTAA
 
Protein sequence
MAMRQVAILG STGSIGVNTL DVIRAHPARF NVVALTAGKQ IELLAQQCVE FKPMIAVVSE 
AGDAARLEKM LLEQGVSTQV MYGPDALVSA VTESSCDTVM AAIVGAAGLV PALAAAKAGK 
RVLLANKEAL VMSGNLFMQA MKSGGGELLP IDSEHNAIFQ CLPNEFTKST HNGLGVEELW 
LTASGGPFRS TPIEQLAAIT PEQACAHPNW VMGRKISVDS ATMMNKGLEV IEAFWLFGLP 
LEKIKVLIHP QSVVHSMVRY RDGSVLAQLG QPDMRTPIAY GLAWPERIEA GVAPLDLAQL 
AALNFSEPEL ARFPCLSLAF AAAKAGGTAP AVLNAANEVA VAAFLDAGLP YLQIPQVVEK 
TLDAIAVTNA DSLETILAID AQARSVAHDL MRQY