| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1301 |
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| Symbol | |
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| ID | 5052320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1374475 |
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| End bp | 1375734 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640471473 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001156079 |
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| Protein GI | 145589482 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.837432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGGACA AGATCACCAC CATCCTAAAG CGGGCTTACG AAGAGGCTAA GCAATTACCA
AATCGTTTTA AAGCTCGTGT TGAGGCAAAT ACAAATGAGA TTCATCGATC TTACTGGGCT
CTCCCACCGG AGACGCGTGC TCGACTGCGC TTAGTTATTA TTTGCATCTC TATTTTGATG
CTCGGCATCG TCATTGGGTT GTTTGTGAAT GTGAACCGCC CAGTTAAATT GGAGAAAAGT
GATAAGTCAC TAAAAGTAGA GAGCTCTGGC GTAATGGAGT TAAAGCTCCC GGGCCTTAAT
TTAAATCCAA ATATTTATGT ATTCAGTGAG GCTGTTAAAT CAGATGTGCC GGTTGAGCTA
AATATGCCCG GCCGATTAAC TTTTAATGCT GAAAAATCTA AGGTGATTTC TGCTCGAGCA
GCCGGTCGAG TTGAACGTAT TGTTGCTTTT GATGGGGCGC AGGTCCAAGT AGGCTCCCCT
GTTTTAGAAA TGTATAGCCC CGATTTCATC TCTGCCGAAC AAGAATATTT ATTGTCTTCA
AAAACTACCA AGATTTTAGA GGGCAATAAG GCCTTGGGTG ACTTGCTTTC TGATTCACGT
ATTACGCAAG ATGCGGCCGC TAACCGTATC CGTAATCTAG GTGCTGGGGA TGGGGAAATT
AAGAACCTAG AAAGAACTGG TAAAACTCAA ACTAACCTAG TAGTGCGTTC CCCAATTGAC
GGGGTTGTAG TCAAGCGTGC AGTAGAGCCA GGTGCATTTG CCAATATAGG TGATGTATTG
GCAACCTTGG CCGATCCTAA AGCTCTCTGG TTCTTGGGTA ATGTTTATGA ACAAGACATT
GCCAAGATTC AAAAAGGGCA AACTATTATT TTACGTACTG AAGCTTACCC AGATAAGGTG
TTTACCGCAC GAGCAAACTT TATTGCGCCA ACAATCGATC CGGATACTAG AGCTTTAGTC
ATTCGCTGCG ATGTTGATAA TCCTGAGGGC TTGCTGCGCC CCGATATGTT TGCCTCTGGA
AAGTTACAAG TAGGGTCTAG CCAGGCAGTT GTTTTGCCTC AAACTGCCAT TGTGCGTGTC
CGTGAGATGC GCTATGTCAT TATTAAAACG GCCTCAGATA CTTATAAGCG GTTTGCAGTG
AAGGGCTTTG ATTTGGATGG CAAACAATTT GCCGTTACTG AAGGGGTGGA GCCTGGTATG
AAAGTATTAA CTGATGGCGC AGTCCTGTTG AATGACCGAT TCGCCAAGCA GGAGGAGTAA
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| Protein sequence | MKDKITTILK RAYEEAKQLP NRFKARVEAN TNEIHRSYWA LPPETRARLR LVIICISILM
LGIVIGLFVN VNRPVKLEKS DKSLKVESSG VMELKLPGLN LNPNIYVFSE AVKSDVPVEL
NMPGRLTFNA EKSKVISARA AGRVERIVAF DGAQVQVGSP VLEMYSPDFI SAEQEYLLSS
KTTKILEGNK ALGDLLSDSR ITQDAAANRI RNLGAGDGEI KNLERTGKTQ TNLVVRSPID
GVVVKRAVEP GAFANIGDVL ATLADPKALW FLGNVYEQDI AKIQKGQTII LRTEAYPDKV
FTARANFIAP TIDPDTRALV IRCDVDNPEG LLRPDMFASG KLQVGSSQAV VLPQTAIVRV
REMRYVIIKT ASDTYKRFAV KGFDLDGKQF AVTEGVEPGM KVLTDGAVLL NDRFAKQEE
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