| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1295 |
|---|
| Symbol | |
|---|
| ID | 5052822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1366896 |
|---|
| End bp | 1368326 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640471467 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001156073 |
|---|
| Protein GI | 145589476 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000293917 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGAG GTGAAAAGCC GGTCAATATT GAAGTGACTG AGCCTATTCG AGTCGAATCT
CTTGATCTTG ATGCTCAAGG TATTGCGCGC ATGGCGCCAA ATGAAGAAGG GGCCGCTGAG
GGCCATAGTG GGAAAGTCAT TTTTATCCAA GGCGCTTTGC CAACCGAGTT GGTGACGTAC
ACGATTACTC GAGACAAGGC GCGCTTTAGT AAAGCAAAAG TACTCGATAT CTTAAAGCCT
GCAGTTTTTA GGGCTGAACC TAAGTGCAAG GCGTTTGGTG TGTGTGGTGG TTGTACGATG
CAGCACTTAG ATATTCGGGC TCAGGTTGCT ATGAAGCAGC GTGTATTAGA AGATGATCTG
CAGCACTTAG CAAAGTTAAA GCCACAAGAA ATTTTGCGTC CCATGGGTGG GCCTACCTGG
GAGTATCGAC ATCGCGCCCG TTTAAGCGCT GTTAATCGCT CGATTAAAAA AGGTACCGTC
CTCATTGGTT TTCATGAGGG CAAGAGTGGC TATGTTGCTG ATATGACTGC TTGTGAAATT
TTGCCTAAGC ATGTTTCTAA TTTATTGCCG CAGTTAAGAA CATTAGTAAA CGGCTTATCC
ATTGTTGATC GCATGCCACA AATAGAAGTG GCAGTAGGTG AACCAGAAGA CCCAAATTCA
TTGGATCCCA AAAAAGCGAG GCCAGTAACA GCCTTGGTCT TTCGAAACCT GAAGCCCTTA
ACCCAGGATG ATGAGCAGCT TTTAAGATCC TTTGCAGACG AACATCAGGT TTGGATTTGG
TTACAACCCA AGGGGATTGA AACAGTAGCG CCGTTTTATC CTGAAACAGG CAAGTTGTGC
TATCGCTTGC CGGAGTTTGA AATCGAAATG CCGTTTATGC CGGCTGACTT TACTCAAGTG
AATCACTTGA TGAATCGTGC ATTGGTTAGT AAAGCGATTC GTTTGTTAGA AGTAAACCCC
AGCGATCGAG TCTTAGATCT ATTTTGCGGT ATTGGTAATT TCACCTTACC GCTCGCTAGA
AAAGCAAAAA CAGTATTGGG TATTGAAGGG TTAGAAACTC TTACCACTAG GGCCAAAGCA
AATGCTGTGC ACAATGGATT AGCGGATAAG GCGAGCTTCA TGCGAAGTGA TTTATTTGAA
GTAACGCCAG ACACAATTGC ATCATGGGGT AAAGCGGAGC GCTGGCTCAT GGATCCACCA
CGTGAAGGTG CAATGGAAAT TTGTAAGGCA CTTGCAGAGT TACATGAAGA GGATAATCTA
TTGTTGCCGC AGCGAATTGT GTATGTATCT TGTAATCCCA AAACCTTAGC CCGTGATGCT
GAAATCTTAT GTCATCAGGC TGGTTACACA CTCCAGAGCG CGGGGGTAGT CAATATGTTC
CCCCATACCT CCCATGTTGA ATCCATGGCA GTTTTTGACC GTTCTGAGTA A
|
|---|
| Protein sequence | MRRGEKPVNI EVTEPIRVES LDLDAQGIAR MAPNEEGAAE GHSGKVIFIQ GALPTELVTY
TITRDKARFS KAKVLDILKP AVFRAEPKCK AFGVCGGCTM QHLDIRAQVA MKQRVLEDDL
QHLAKLKPQE ILRPMGGPTW EYRHRARLSA VNRSIKKGTV LIGFHEGKSG YVADMTACEI
LPKHVSNLLP QLRTLVNGLS IVDRMPQIEV AVGEPEDPNS LDPKKARPVT ALVFRNLKPL
TQDDEQLLRS FADEHQVWIW LQPKGIETVA PFYPETGKLC YRLPEFEIEM PFMPADFTQV
NHLMNRALVS KAIRLLEVNP SDRVLDLFCG IGNFTLPLAR KAKTVLGIEG LETLTTRAKA
NAVHNGLADK ASFMRSDLFE VTPDTIASWG KAERWLMDPP REGAMEICKA LAELHEEDNL
LLPQRIVYVS CNPKTLARDA EILCHQAGYT LQSAGVVNMF PHTSHVESMA VFDRSE
|
|---|
| |