| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1235 |
|---|
| Symbol | |
|---|
| ID | 5052152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1298127 |
|---|
| End bp | 1299152 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640471407 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001156014 |
|---|
| Protein GI | 145589417 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4239] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCT GGCAACGTTT TAAACATAAT CGCAGAGGTT ATGCCAGTCT GTGGTTATTT
GTCGTGCTAT TTGGCCTATC ACTTTGTGCA GAGTTAATTG CTAACGACAA ACCTTTAGTC
GTTCATTATG ACGGTCATTT TTACTTCCCT ATTGTCCAGA ATCAACCAGA GACTGTTTTT
GGTGGCGACT TTGCTACTCC AACTGATTTC TTGGATCCCG ATATTCGCAA CAATATTACT
AGTCATGGAA ATTGGGCTAT CTATCCGCCA ATTACTTATA ACTATGAGAC GCTAAATTAC
TTTTCACAGG TACCCAATCC TGCGCCACCC TCATGGCAAA ACTGGTTAGG AACTGATGAT
CGCGGTCGCG ATGTGCTATC GCGTTTAATT TATGGCTTTC GTTTATCGAT TCTGTTTGGC
TTAGCGCTCA CCATTGTGGG GGTGAGTGTG GGGATTATTA CAGGATCACT AATGGGGTTC
TTTGGCGGTA AATTCGACTT AATTTCCCAA AGACTGATTG AGATCTGGTC AGCAATGCCA
GAGTTATATC TATTAATTAT TTTCGCATCC ATTTTTAATC CAAGCGTTTC ATTGCTGATC
ATTTTGTTGG CTGCTTTTGG TTGGATGGGC TTATCAGATT ATGTACGCGC TGAATTTTTC
CGTAATCGCT CGTTAGAGTA TGTCAGAGCA GCTCGCGCTC TTGGTCTAAC CAATTTGCAA
ATTATGTGGC GTCATATTCT GCCAAACAGT CTGACCCCAG TCATTACCTT TTTGCCGTTT
CGCATGAGCG CGGCAATTCT GTCTTTAACC AGCTTAGACT TCTTGGGCTT GGGTGTTCCG
CCTGGTACGC CCAGTCTCGG TGAGCTGCTT TCTCAGGGCA AAGGCAATCT AGAGGCATGG
TGGATTTCTC TTTCTACGTT TGTTGTCTTA GTAACAACAT TGTTATTGTT GACCTTTATG
GGTGAGGCCT TACGTGATGC CTATGACTCT CGTAAGGCGG GCTTAATGAG TGGAGGGCGC
TCATGA
|
|---|
| Protein sequence | MSRWQRFKHN RRGYASLWLF VVLFGLSLCA ELIANDKPLV VHYDGHFYFP IVQNQPETVF
GGDFATPTDF LDPDIRNNIT SHGNWAIYPP ITYNYETLNY FSQVPNPAPP SWQNWLGTDD
RGRDVLSRLI YGFRLSILFG LALTIVGVSV GIITGSLMGF FGGKFDLISQ RLIEIWSAMP
ELYLLIIFAS IFNPSVSLLI ILLAAFGWMG LSDYVRAEFF RNRSLEYVRA ARALGLTNLQ
IMWRHILPNS LTPVITFLPF RMSAAILSLT SLDFLGLGVP PGTPSLGELL SQGKGNLEAW
WISLSTFVVL VTTLLLLTFM GEALRDAYDS RKAGLMSGGR S
|
|---|
| |