Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1180 |
Symbol | |
ID | 5053651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1239214 |
End bp | 1240185 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640471353 |
Product | putative ABC transporter, periplasmic protein |
Protein accession | YP_001155960 |
Protein GI | 145589363 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCGA TTTACAAAAA GCTACAAGTA ACGGTTGCTG CAATAGCTAT TGCTGGCATG TCGTTTAGTG CTGCCGCAGA AGTAAAAACA GTCACTATCT CTCAGGCATT TCAGTCAATG TTGTATCTAC CTCTTTATGT CGCAATTGAT AAAGGCTTCT TTAAAGACCA AAGCTTAAGT GTGATTAAAG AAACTGCTGG ATCTCCTACT GCAGCTTTAT CTTCAGTTCT TTCAGGAAGT TCACAGTTTT CAATTCATGG TCCAGAATGG ACTGCTATTG CCGCTTCAAA AGGCGCCAAT GTCGGAATTA TTAGTAATGC TGTTAACGGC GCAGCTGTAT GGATTGCAAC AGCTCCTGAT GTGAAATTTA CGAATATTAA GGACATCAAG GGTCAAAAAG TAGTTACCGG TTTAATGCCA ACGACTAGTA CCTCCTTGTT CCTTAAGTTG CTCAAGGAAA ATGGCATGAG TGATAAAGAT ATCGATATGA TCCAAGTTCC TCTAGGTACA GAACCTGCGG CGCTATTGGG TGGTCAGGCA AAGGTAGCGG TGTTGTATGA GCCAGGCCTA GATCAAGTGG CGATCAAAGG AATGAAGGTT GTTTTAGGTT TCCCAAAAAC TTATGGCGCT TATGCTTTCT CATCCATTAC TGCAATGAAG ACAGTAGATC CTGTAGCTGC TCAGAGAATG GTTAATGGTA TGGAAGTTGC ACTTCGTTAC ATGGCTAAAG ATCCTAAAGG TACTATCGAG ATTGCTAAGA AGGAGTTTCC AACACTTGAT CCACAAGTTG TTGAAAATGC GGTAACTCGT ATGATGAATG AGAACGTATT TCCTAAGAGT GTTCAAATTA CACCGGCAGC TCTCAAGATT GCAATGGATA CACAAATTGC TTTAGGTAAC CTAAAGGAGC AACCTGTATT TGAAAACTTT ATTAACGAAA CCTATATTCA AAACGCTTTG AAATTGAAGT AA
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Protein sequence | MKSIYKKLQV TVAAIAIAGM SFSAAAEVKT VTISQAFQSM LYLPLYVAID KGFFKDQSLS VIKETAGSPT AALSSVLSGS SQFSIHGPEW TAIAASKGAN VGIISNAVNG AAVWIATAPD VKFTNIKDIK GQKVVTGLMP TTSTSLFLKL LKENGMSDKD IDMIQVPLGT EPAALLGGQA KVAVLYEPGL DQVAIKGMKV VLGFPKTYGA YAFSSITAMK TVDPVAAQRM VNGMEVALRY MAKDPKGTIE IAKKEFPTLD PQVVENAVTR MMNENVFPKS VQITPAALKI AMDTQIALGN LKEQPVFENF INETYIQNAL KLK
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