| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1100 |
|---|
| Symbol | |
|---|
| ID | 5051967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1142449 |
|---|
| End bp | 1143183 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640471270 |
|---|
| Product | peptidase M48, Ste24p |
|---|
| Protein accession | YP_001155880 |
|---|
| Protein GI | 145589283 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGCCTGA GGACTACCTT CTTAATTGTG GTGTGTAGCT TATTCCTGTT TGGATGCGCT
AGTTCTGGGG TTGGAAAATC GACCAATATC TATTTCCCAG ATGATCGTTG GTGGGTTGGG
GCTAAAACCA GCCAGAATAA GAGTGAACAA AATTTAGCAA TAGCGCGCCT TAAGATGCAG
CAAGTTAGTT CTGTTCCATT TTTATTGGGG GTAGCTCAGA GTCCCGAAAT TAATGCCTAC
GCAGTCCAGC AAAATGAAAA ATACCTTGTC ATTTTTACTA ATGGCTATTT GCAGCAATTT
GGTCAAGATC AGGATGTATT GGCCTTTACC TTAGGTCACG AACTTGCACA CCATCAACTC
GGTCATACTG AGCCCGGTAG AAACCAAGTC CGAGACACGG CCTGGAGCGC TTCGAGTCAG
GCCTTGGGAA TGCTTGCTAG CTACTTTGTG CCATTTAGTG GTTTTTTTGT AGGTAATGCG
GTAAAGGCGG CTGGTTTAAG CTTCAATCGG GATGATGAGC GGGCTGCGGA TGAGCTGGGC
ATGAAGTGGG TCATTCAGGC GGGCTACTCC CCTTGTGGCG AATACCGTCT AGCTAAAAGT
TTGGATCAGC TAAAGCAAGG CGCTAACATT CCATTTTTAT CAACTCACCC AGGAAATGGT
GAGCGCATGG AGGTCGCTAA AGACATGCAA CTCAACCAAG GGCTTCTTAC TTGCGACGCA
GGGAGTGCAG GATAG
|
|---|
| Protein sequence | MRLRTTFLIV VCSLFLFGCA SSGVGKSTNI YFPDDRWWVG AKTSQNKSEQ NLAIARLKMQ
QVSSVPFLLG VAQSPEINAY AVQQNEKYLV IFTNGYLQQF GQDQDVLAFT LGHELAHHQL
GHTEPGRNQV RDTAWSASSQ ALGMLASYFV PFSGFFVGNA VKAAGLSFNR DDERAADELG
MKWVIQAGYS PCGEYRLAKS LDQLKQGANI PFLSTHPGNG ERMEVAKDMQ LNQGLLTCDA
GSAG
|
|---|
| |