| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0840 |
|---|
| Symbol | sucA |
|---|
| ID | 5052710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 833018 |
|---|
| End bp | 835873 |
|---|
| Gene Length | 2856 bp |
|---|
| Protein Length | 951 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470999 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_001155622 |
|---|
| Protein GI | 145589025 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGG ATCAAAGAGA TAATTCCTAT CTCTTCGGCG GAAACGCCCC CTACGTAGAG
GAACTCTACG AATCTTACTT GCACGATCCA GCTTCGGTTG CTGATCATTG GCGAGATTAT
TTTGATAACG TAAAACAGGT TCCAGCAGTT GACGGCTCGT CTCGCAATGA CGTCGCCCAC
GGACCTATTG TTGCTTCATT TGCTGAGCGC GCTAAGCAGG GCCCCATCAG AACGATTTCT
GATTCGGCTG ACTCAGAGAT GGGCCGCAAA CGCGTTGCTG TTCAGCAGTT AATTGCCGCG
TATCGTAACG TCGGTAATCG CTGGGCAAAC TTAGATCCAT TGAAGCGGAC GGAGCGCCAG
GACATTCCTG AGTTAGATCC CGCCTTCTAT GGCTTTACTG ATGGCGATAT GGATATCGTC
TTCAACACTA GCAATACATT CTTTGGCAAA AACGAAATGT CTTTGCGTGA CTTGCTGCAA
GCATTGCGCG AAACATACTG CGGCACGATC GGTGTCGAGT TTATGTTTAT TGCTGACCAG
AAGATTAAAA AGTGGTGGCA AGAAAAATTA GAGTCTATTC GCTCCACGCC ACAATTTAAT
GTGGATGAGA AGCGCCAGAT TCTTGACCGA GTCACGGCAG CAGAGGGCCT AGAGCGCTAT
CTCCAGGCAA AGTATGTTGG TCAAAAGCGA TTCTCTTTAG AGGGTGGCGA AAGCTTTATT
GCCTGTATGG ATGAATTAAT TCGTGATGCG GGTAATAAGG GCGTACAAGA AATTGTGATT
GGTATGGCTC ACCGCGGTCG TTTGAACGTA TTGATCAATA CTTTAGGAAA AATGCCTAAA
GATTTATTTG CTGAGTTCGA GCACAAAGGT CCTGAAACAT TGCCCGCTGG CGACGTTAAA
TATCACCAAG GTTTCTCAAG CGATATCTCT ACCCCAGGCG GCCCGGTCCA TTTGTCTTTG
GCATTTAACC CTTCTCATTT AGAAATTGTG AACCCAGTAG TTGAGGGTTC TGCACGTGCT
CGTATGGAGC GTCGTGGTGA TATGTTGGGT ATGCAAGTAA TGCCAGTCTT GGTTCACGGT
GATGCTGCTA TTGCAGGCCA AGGCGTGATG CAGGAAACAT TGGCGATGTC GGAAGTTCGT
GGTTATTCCA CGGGTGGCAC GATGCATATT GTGATCAACA ATCAAATTGG TTTTACTACT
TCTGACCCAC GCGATTTGCG TTCTAGCTTG TATTGCACAG ACATCATGAA AATTGTTGAT
GCTCCTGTAC TGCATGTGAA CGGAGATGAT CCTGAGGCGG TTGTATTGGC TACCAAATTA
GCGCTTGAAT TCCGCATGAA GTTTCATAAG GATGTTGCAG TTGACATCAT TTGCTTCCGT
AAGCTTGGTC ATAACGAGCA AGATACGCCT GCAATGACTC AGCCATTGAT GTACAAAATC
ATTGCCGCCC ACCCTGGTAC ACGTAAGGTG TATGCAGACA AACTGGAAAC TCAAGGTGTA
TTACCTGCCG GTACTGGTGA TTTGATGGTT AAAGAGTACC GCGCAGCAAT GGACGAGGGT
AAGCAAACTT CAGATCCAGT ATTAAGCAAT TTCAAAGGCA AGTTTGCAGT AGATTGGTCT
CCATTTTTGA ATAAGAAGTG GACTGATGAA GCTGATACCG CCATTCCATT AACAGAATGG
AAGCGTTTGG CTGAGAAGAT TTCAACCATT CCAGATGACT TTAAAGCACA CCCATTGGTC
GCAAAGGTCT ATAACGACCG CGCAGCAATG GGTCGTGGTG ACGTGAACAT CGATTGGGGT
ATGGGTGAGC ATATGGCTTT CGCATCATTG GTTGCGAGTG GCTATCCAGT GCGTTTATCT
GGCGAAGACA GTGGACGCGG TACATTTACT CACCGTCACG CAGTTTTGCA TGAGCAAAAT
CGTGAGAAGT GGGATACCGG TACTTACATA GCACTGCAAC ATGTCACTAA AGATCAAGCA
CCATTTGTGG TGATTGACTC AATCCTCTCG GAAGAGGCTG TTCTGGGTTT TGAATACGGC
TATGCCGCTG CAGAACCGAA TACCCTCACT ATTTGGGAGG CACAGTTTGG CGACTTTGCT
AACGGTGCTC AAGTAGTTAT TGACCAATTT ATCGCCTCTG GTGAAGTGAA GTGGGGTCGT
GCAAACGGTC TAGTCATGAT GTTACCGCAT GGTTATGAAG GTCAGGGCCC AGAGCATTCC
TCTGCACGTC TTGAGCGTTT CATGCAGTTG TGCGCTGACA CCAATATGCA GGTGATTCAA
CCAACAACTG CAGCACAGAT TTTCCACGTG TTGCGTCGTC AAATGATTCG CCAGTTCCGT
AAGCCACTGA TCTTGATGAC TCCAAAATCA TTGCTCCGCA ATAAAGAGGC CGCATCACCT
TTATCAGAAT TTACTAAAGG TGGCTTCCAA ACGATATTGG GTGAGCGTGA TACTGAATTA
GATGCCAAGA AAGTCACTCG TTTAATTATG TGTTCAGGCA AGGTCTATTA CGACCTAGTT
AAACAACGCA CCGAGAAGAA GATTGAAGAT GCTGCGATTA TTCGCTTAGA GCAACTCTAT
CCTTTCCCGC ATAAAGCATT GACTGCTGAG TTGAAGAAAT ATCCAAAACT GGAAGAGATA
GTGTGGTGTC AAGACGAGCC GCAAAACCAG GGTGCTTGGT TCTTCGTGCA GCACAACATC
TTGGAAAACA TGTCTGATGG TATGAAGCTG GGCTATGCAG GCCGTCCCGC ATCAGCATCT
CCAGCTTGTG GTTACGCTCA TCTCCACCAA GAACAGCAGA AGTCTCTATT GAATGCGGCA
TTTGCCAAGC TCAAAGGTTA CGTGATCACG AAATAA
|
|---|
| Protein sequence | MMQDQRDNSY LFGGNAPYVE ELYESYLHDP ASVADHWRDY FDNVKQVPAV DGSSRNDVAH
GPIVASFAER AKQGPIRTIS DSADSEMGRK RVAVQQLIAA YRNVGNRWAN LDPLKRTERQ
DIPELDPAFY GFTDGDMDIV FNTSNTFFGK NEMSLRDLLQ ALRETYCGTI GVEFMFIADQ
KIKKWWQEKL ESIRSTPQFN VDEKRQILDR VTAAEGLERY LQAKYVGQKR FSLEGGESFI
ACMDELIRDA GNKGVQEIVI GMAHRGRLNV LINTLGKMPK DLFAEFEHKG PETLPAGDVK
YHQGFSSDIS TPGGPVHLSL AFNPSHLEIV NPVVEGSARA RMERRGDMLG MQVMPVLVHG
DAAIAGQGVM QETLAMSEVR GYSTGGTMHI VINNQIGFTT SDPRDLRSSL YCTDIMKIVD
APVLHVNGDD PEAVVLATKL ALEFRMKFHK DVAVDIICFR KLGHNEQDTP AMTQPLMYKI
IAAHPGTRKV YADKLETQGV LPAGTGDLMV KEYRAAMDEG KQTSDPVLSN FKGKFAVDWS
PFLNKKWTDE ADTAIPLTEW KRLAEKISTI PDDFKAHPLV AKVYNDRAAM GRGDVNIDWG
MGEHMAFASL VASGYPVRLS GEDSGRGTFT HRHAVLHEQN REKWDTGTYI ALQHVTKDQA
PFVVIDSILS EEAVLGFEYG YAAAEPNTLT IWEAQFGDFA NGAQVVIDQF IASGEVKWGR
ANGLVMMLPH GYEGQGPEHS SARLERFMQL CADTNMQVIQ PTTAAQIFHV LRRQMIRQFR
KPLILMTPKS LLRNKEAASP LSEFTKGGFQ TILGERDTEL DAKKVTRLIM CSGKVYYDLV
KQRTEKKIED AAIIRLEQLY PFPHKALTAE LKKYPKLEEI VWCQDEPQNQ GAWFFVQHNI
LENMSDGMKL GYAGRPASAS PACGYAHLHQ EQQKSLLNAA FAKLKGYVIT K
|
|---|
| |