| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0610 |
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| Symbol | |
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| ID | 5053944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 599280 |
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| End bp | 601043 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640470763 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001155392 |
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| Protein GI | 145588795 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCTC AAGACCGTAC CGCCTTAAAT CGCCTAATTA CCTACCTCAA ACCCCATATC
CGCTTGATTA TGGGGTCCTT AGCAGCTATG GCTGTGGTTG CAGGGGCTGA AACCTCTATC
CCAGCCCTAA TGAAGCCACT TCTCGATCGA GGTTTTACTG GCCAGCTTAA TAGTAAGTTA
TGGCAAGTCC CCGTATTTTT GGTTGGCCTA GCTTTAGTCC GCAGTTTGGC TCAGTTTTTA
TCAAATTATT TACTCACCAG AGTAATCAAC GCAGTTTTAC TCAAATTGCG TGAGCAAATG
TTTCAAACAC TCTTGCATGC AAAAACTACT TTCTTTCAAC AAAATTCAGC CTCGAATTTA
ATTAATGCCG TTGTATTTGA AGTCAATAAT GTTTTGTCTG TCTTGGGTGG AATGTTAATT
AGCTTGGTCC GTGATTCACT CACAGTCGTT GGTTTGATGG GTTACCTTAT CTATTTGAAC
TGGCAGTTAA CTTTGGTGGT ATTAATTATT TTCCCAGTGA TCGCATTGAT CATGAGCAAA
ATTAATCGCC GCTTGAGATC CTTAAACCGC GAGCAGCAAA ATTTGACGAG TGAGTTAGCT
TATATCGTTG AAGAATCTTC TGCGGGTTAT AAGATCGTTA AAGTTCATGG GGCTCAGGAA
TATGAGATGA GTCGCTTCAT GGAGAAGGCA GAACGTTTAC GCCAATTTGC CTTGAAGTCG
GCTGTTGCCG GCGGGCTTAA TCAGCCGATT ACCCAGTTGA TTGCCTCTAT GGCTCTTTCG
GTGGTGCTGG TGATAGCCTT GATGCAGTCG GCTACGGAAG GCACAACGGT TGGTGGGTTT
GCTGCATTTA TTACCGCCAT GATGCTAGTC ATTTCACCTT TAAAGCATTT GGCCGATATC
AATCAACCTT TGCAAAGAGG TTTGACAGCA GCGGAAATGA TCTTTGGTTT AATGGATCAA
CCGCTTGAGG AAGACGAAGA TCGTAAGGCA AACATGATTG CCTTGGCTCA TGCCAAAGGC
GCTATTCGTT TTGAAAAAGT AGGATTCTCT TATCAGCAAG AAGTCGGTCG CAAGGATGCA
TTAATTGATA TTAATTTGGA TATTCAGCCT GGCGAAGTAG TGGCTTTTGT TGGCCCCTCG
GGCGGCGGTA AGTCGACTCT AGTGAATTTA TTACCGCGAT TCTTTAAGCC CACCTCAGGA
CATATTTTCT TGGATGGAAT TCCTCTAGAA GATATCCTAC TATCCGATGT CAGAAAGCAA
ATTGCTTTTG TGAGTCAAGA TGTTATTTTG TTTAACGATA GTATTGCTGC TAACGTCGCT
TATGGTGCTG TTGGAGAAGA GAGTATTGAC CGAGGCAGGG TAATCGAGGC CTTGGAAGCG
GCCAACTTAA GTGGATTAGT CCGAGACCTT CCCGAGGGAA TTGATTCGCT TGTGGGTGAC
AACGGTAATC GCTTATCTGG CGGCCAGCGT CAGCGTTTGG CGATTGCTCG TGCGATTTAT
AAAAATGCCC CTATCTTGAT TCTGGATGAG GCAACCTCAG CTTTAGATTC GGAATCAGAA
CGTCAAGTGC AAGACGCCTT AGAGCGACTC ATGGCTGGCC GTACCACCTT AGTGATTGCT
CACCGTTTGT CTACGATTGA GCATGCCAAT CGAATTGTCG TTTTAGAAAA TGGCAAGGTG
GTTGAAAATG GATCGCATGA GGATCTCATC AAACATGATG GCCTATATGC CAACCTCCAC
CGTATTCAAT TTTCAAACGC TTGA
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| Protein sequence | MNAQDRTALN RLITYLKPHI RLIMGSLAAM AVVAGAETSI PALMKPLLDR GFTGQLNSKL
WQVPVFLVGL ALVRSLAQFL SNYLLTRVIN AVLLKLREQM FQTLLHAKTT FFQQNSASNL
INAVVFEVNN VLSVLGGMLI SLVRDSLTVV GLMGYLIYLN WQLTLVVLII FPVIALIMSK
INRRLRSLNR EQQNLTSELA YIVEESSAGY KIVKVHGAQE YEMSRFMEKA ERLRQFALKS
AVAGGLNQPI TQLIASMALS VVLVIALMQS ATEGTTVGGF AAFITAMMLV ISPLKHLADI
NQPLQRGLTA AEMIFGLMDQ PLEEDEDRKA NMIALAHAKG AIRFEKVGFS YQQEVGRKDA
LIDINLDIQP GEVVAFVGPS GGGKSTLVNL LPRFFKPTSG HIFLDGIPLE DILLSDVRKQ
IAFVSQDVIL FNDSIAANVA YGAVGEESID RGRVIEALEA ANLSGLVRDL PEGIDSLVGD
NGNRLSGGQR QRLAIARAIY KNAPILILDE ATSALDSESE RQVQDALERL MAGRTTLVIA
HRLSTIEHAN RIVVLENGKV VENGSHEDLI KHDGLYANLH RIQFSNA
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