| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0555 |
|---|
| Symbol | |
|---|
| ID | 5052481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 546612 |
|---|
| End bp | 547835 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640470709 |
|---|
| Product | cytochrome c, class I |
|---|
| Protein accession | YP_001155339 |
|---|
| Protein GI | 145588742 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2010] Cytochrome c, mono- and diheme variants |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.474157 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTGCA CTTTATCCAC TTCGGCAAAC AGATTAAAAA GCCTGTTTTT TTGTGCAACC
GTTGCCTTTG CACCTTTTTA TGCTTTTGCT GATGATGCCG TAAAAGATGG CGCTTATCTA
GCTACCGCAG GAGACTGCAC CTCTTGTCAC ACAGCACCAG GCGGAAAGCC CTTTGCTGGT
GGCCTCAAAA TGGCAAATCA ATTTGGCTAT TTACTCACAC CGAACATTAC GCCTGATATA
GAAACCGGCA TCGGGTCTTA CAGCAAAGAT GATTTTTTTC GTGTTCTTCA TAACGGAGTA
AACAAAAAGG ATCAGGATCT CTACCCTTTT ATGCCATATG GGGCATATAC CAAAGTGACT
AGAGAAGACT CTGACAAAAT TTACGATTAT TTAAGAACCA TTCAACCAGT TTCGAATTCT
ATTGAGGTTA ATCATCTAGA TTTTCCCTTC AATATTCGAA GCAGCATGAT TGTTTGGCGT
GAATTATTTT TCAAACCGGG GACATACAAA TCTGATCCTA CTCAATCCGC CGCGTGGAAT
CGTGGGGCTT ATTTAGTCGA AGGCTTAGGC CACTGCAGCT CTTGTCACTC ACCTCGTAAT
TTAATGGGGG CCATTGAAAA TTCGAAGGCT TATACAGGTT CAGTGATTGA TGGCTGGTAC
GCCCTAAATA TCACCTCAAA TCCGCTAACA GGTCTTGGCA AGTGGTCAGC TCAAGATATT
GCACGCTTCC TAAAAACGGG ATCCTATGAG AGCAAAACAA CTGCCTTAGG TCCAATGGAG
GAGGTGGTTC ATAACAGCAC AGGAAAAATG ACTGATTCGG ATCTATTGGC AATGGGAACT
TACCTTAAGA CTTTGCCAGC CAATTCAAGT TTGTCAGAAG ATCAAAAAAA AGTGGATGCA
AACACTCTAG TTGGCACCAG ACTTTATATT GATAACTGCA GCGGCTGTCA TCAGTCTTCT
GGCAGAGGTA TTACCGGGGT TATTCCACCT CTAGCCGGCA ACCCTGCAGT AATAGCCGCT
CGGCCAAACA ATATTATTAA GGTAATCATT CGCGGATTCA CTGCGCGCAA TGGCTATATT
CCGATGCCAT CATTCGCCTC CAGATTAAAT GATCAGGAAA TTGTGGAAAT TACCAATTAC
ATCAGATCTA ACTGGGGAAA TACCGCTAAC CCGGATGCCA CTAAAGGTTT AGTGGAGGAT
ATTAGAAAGC ATCCTGGTAT TTAA
|
|---|
| Protein sequence | MFCTLSTSAN RLKSLFFCAT VAFAPFYAFA DDAVKDGAYL ATAGDCTSCH TAPGGKPFAG
GLKMANQFGY LLTPNITPDI ETGIGSYSKD DFFRVLHNGV NKKDQDLYPF MPYGAYTKVT
REDSDKIYDY LRTIQPVSNS IEVNHLDFPF NIRSSMIVWR ELFFKPGTYK SDPTQSAAWN
RGAYLVEGLG HCSSCHSPRN LMGAIENSKA YTGSVIDGWY ALNITSNPLT GLGKWSAQDI
ARFLKTGSYE SKTTALGPME EVVHNSTGKM TDSDLLAMGT YLKTLPANSS LSEDQKKVDA
NTLVGTRLYI DNCSGCHQSS GRGITGVIPP LAGNPAVIAA RPNNIIKVII RGFTARNGYI
PMPSFASRLN DQEIVEITNY IRSNWGNTAN PDATKGLVED IRKHPGI
|
|---|
| |