| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0390 |
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| Symbol | |
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| ID | 5053434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 383238 |
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| End bp | 384257 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640470541 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001155174 |
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| Protein GI | 145588577 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCA GTCCCATACC CAAGCCTTCC AAGACCCAAT CTGCCCCACC GGCAGTCCAT
TTGCAGACAA TCGGCCCTGA AGAGGCTGGC CAGCGTTTGG ATAATTACTT GCTACGTTGG
GCCAAAGGGG TCCCCAAAAG TCACGTTTAT CGGATTATTC GCTCAGGTGA AGTCCGAGTA
AATAAGAAGC GAGCTGAGCC CACTACCCGG CTGGTTGAGG GGGATGTGGT TAGAGTTCCT
CCTGTCAGAA TTGCTGAGCC TGCCCAGATG GCGGCTGTTA ATACCGCCCA GACCAAGTCC
CGTGCGCAGG GCTATTCCGA CAAAATGCCC ATCCTGTTTG AAGATGAGGC ACTCCTGATT
GTGAATAAAC CAGCGGGATT GGCGGTTCAT GGCGGCTCAG GAATTGCTTT GGGGGTGATT
GAAACCCTTC GAATTACTCG TCCCGAGTTG AAGTTTTTGG AATTAGTGCA TCGCTTGGAT
CGCGATACCT CCGGAGTTCT ACTCTTAGCT AAGAAACGGA GTGCTCTCGT TGAATTGCAT
CGCCAGATTC GTGAAGGCCA AACAGACAAG CGCTACTACT TGCTTGCACA TGGTGAAATC
GAGCAGGGCG CGCAAGTGAT GCAACTGAAA TATCCGCTTC ATAAGTATTT ACTGGCAAAT
GGTGAGCGGC GCGTTCGTGT TGATCCGGAC GGATTGCCTA GTCACACCGC ATTACGAGTG
ACTCAAGTAT TCAAGCGGGA AGGTGCTGCG ATCACATTGG CTGAGGCTCA GTTAAAAACA
GGGCGCACCC ATCAGATTCG AGTACATCTT CTAAAGCTAG GACACGCTAT TTTGGGTGAT
GATAAGTATG GATTTGAAGA TCAAGATAAG TTACTCAAAT CCAAGCGACT CTATCTGCAT
GCCCATCTGG CCGGCTTTAC GCACCCACGT ACCGGTGAAA AAATGCGCAT TGAATCACCT
TTGCCATCAG AATTTGCAGC CATGATGAAA ACCTTTGATG TTGCTGATGT AAGTGAATGA
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| Protein sequence | MKPSPIPKPS KTQSAPPAVH LQTIGPEEAG QRLDNYLLRW AKGVPKSHVY RIIRSGEVRV
NKKRAEPTTR LVEGDVVRVP PVRIAEPAQM AAVNTAQTKS RAQGYSDKMP ILFEDEALLI
VNKPAGLAVH GGSGIALGVI ETLRITRPEL KFLELVHRLD RDTSGVLLLA KKRSALVELH
RQIREGQTDK RYYLLAHGEI EQGAQVMQLK YPLHKYLLAN GERRVRVDPD GLPSHTALRV
TQVFKREGAA ITLAEAQLKT GRTHQIRVHL LKLGHAILGD DKYGFEDQDK LLKSKRLYLH
AHLAGFTHPR TGEKMRIESP LPSEFAAMMK TFDVADVSE
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