| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0325 |
|---|
| Symbol | |
|---|
| ID | 5053413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 320007 |
|---|
| End bp | 321293 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640470477 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001155110 |
|---|
| Protein GI | 145588513 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1232] Protoporphyrinogen oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGAAAAA AAGTTGCAGT TTTGGGTGCT GGCCCTATGG GTCTAGCGGT AGCTTATCAA
TTAGCTAGAG ATGGTCATCA TCCTATAGTT TATGAAGCCG ATGATCGTAT TGGCGGTATG
ACTGCGGCGT TCGATTTTTC CGGCCTTAGG ATTGAGCGTT ACTATCATTT TCACTGCATA
TCTGACCATG CTTTTTTAAA AGTGCTAGAT GAGTTGGGTT TGAGTGAAAA AATGCGTTGG
ATCCCCACGA AAATGGGGTA TTGGTATTTA AATCAATTGC AGGATTGGGG AAATCCTGTG
GCATTACTTA AATTTCGCGG TCTGAGCTTT ATTGCTAAAT TTCGCTATGG CTTGCATGCA
TTCATATCTA CTAAGCGTGA TGATTGGAAG CCTTTGGATA AAGGCAATGC TGTGCAGTGG
ATCCAGCGAT GGGTAGGCCC AGAAGCTTAC GAGGTTTTAT GGCGCAGATT ATTTGATTAC
AAATTTTATG AGTACACAAG TAATCTCTCG GCAGCTTGGA TATGGAGTCG CATACGCCGT
ATTGGACGCT CACGCTACAG TCTATTTAAA GAAAAACTTG GCTATCTTGA GGGTGGTTCG
GATACTCTTT TACATGGTAT GCAGTTTGAT ATTAAAAAGA ACGGTGGGGA AGTGTTTCTA
AAAACGCCGG TAACTAAAGT TGTCATTGAA AATGATAGTG TGAAGGGTAT TCAGACCCCA
AATGGTTTTG AACAATTTGA TACCGTTATT AGTACGATCC CGCTCCCTTT TATACCAAGG
GTAATTCCAG ACTTACCAAG TAAAATTTTG ACGCAATTTA AAAATGTTAA AAATATTGCG
GTTGTTTGTG TAATCGTGAA ATTAAGTAAG CCTTTAACCG AGTATTTTTG GCTCAATATA
AATGACCCTG AAATGGATAT ACCCGGCATA GTGGAATACT CTAATTTGCG TCCGTTAGAG
TATTCGATTG TGTATGTGCC GTTTTATATG CCAGGAGAGC ACCCAAAGTT TGCTCAGCCT
GATGAGGTAT TTCTTGGAAA GGTAAAAAAA TATTTCAAGA AAATCAATCC CAAGCTTACA
GATGATGATT ATTTAGATAT TCGGGCCAGT CGATATCGCT TTGCACAGCC AATTGGGGTG
CCGGGCTATT TAGAAACTAT CCCTAATGCT AAGCTTCCAA TTAATGGTCT TTGGGTTGCG
GATACTTCCT ACTACTACCC TGAAGATCGG GGAATTTCTG AGAGTATAGA TTTCGGTCGA
AAAATGGCTC AGGATGCTGT CAGGTGA
|
|---|
| Protein sequence | MGKKVAVLGA GPMGLAVAYQ LARDGHHPIV YEADDRIGGM TAAFDFSGLR IERYYHFHCI
SDHAFLKVLD ELGLSEKMRW IPTKMGYWYL NQLQDWGNPV ALLKFRGLSF IAKFRYGLHA
FISTKRDDWK PLDKGNAVQW IQRWVGPEAY EVLWRRLFDY KFYEYTSNLS AAWIWSRIRR
IGRSRYSLFK EKLGYLEGGS DTLLHGMQFD IKKNGGEVFL KTPVTKVVIE NDSVKGIQTP
NGFEQFDTVI STIPLPFIPR VIPDLPSKIL TQFKNVKNIA VVCVIVKLSK PLTEYFWLNI
NDPEMDIPGI VEYSNLRPLE YSIVYVPFYM PGEHPKFAQP DEVFLGKVKK YFKKINPKLT
DDDYLDIRAS RYRFAQPIGV PGYLETIPNA KLPINGLWVA DTSYYYPEDR GISESIDFGR
KMAQDAVR
|
|---|
| |