Gene Pnuc_0228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0228 
Symbol 
ID5052709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp227574 
End bp228602 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content46% 
IMG OID640470380 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001155013 
Protein GI145588416 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAATTC GTGTTGCAAT CAATGGTTAT GGACGTATTG GACGTATGGT ACTGCGTGCC 
TTATACGAAG ATCAGGTAAA CGGCAAACCA AGGCGTGATA TCAAAATCGT AGCAATTAAT 
GCTATGGGAG ATATTGATAT CAATGCCCAT TTAACCCAAT ACGATTCAGC CCACGGGCGT 
TTTCCTGCAG AGGTATCAGT TGATGGCGAT CACATGGTGG TTAATGGCGA TCGCATCAAG 
ATGTTCTCCA CCCGCAATCC ACTGGAAACT CCATGGGGTG AGCTAGGCGT TGATCTGGTG 
CTTGAGTGCT CCGGCAAATT TACCTCTAAA GAAAAAGCCA TGGTGCACAT TTCTCAGGGC 
GCGAAGAAGG TATTAATTTC TGCTCCTGGT GAAAAAGATG TTGATGCCAC TATTGTTTAC 
GGTGTAAATC AAAATGTTCT CAAGCCAAGC GATGTGGTTG TGTCTAATGC GAGTTGTACA 
ACCAACTGTT TAGCGCCACT AGTAAAACCA TTGTTAGAAA AAATTGGCAT TGAATCTGGC 
TTGATGACTA CGATTCATGC TTTTACGAAT GACCAAGTGT TAACGGATGT GTATCACAAG 
GACATGCGCC GTGCGCGTTC TGCTGTCACC AGTATGATTC CAACTAAGAC GGGCGCAGCA 
AAAGCAGTGG GTCTTGTATT ACCCGCTTTA GCTGGTCGTT TTGATGGCTT TGCGATGCGT 
GTTCCAGTAA TTAACGTTTC TGTGGTTGAC CTGACTTTTG CTGCTAGCCG CGCCACTAGC 
GTTGATGAAG TGAACTCTAT CTTGAAGACA GCCAGCGAAG GAGAGCTCAA AGGCATTTTA 
GGATTCAACA CTTTGCCGCT AGTTTCTATC GACTTTAATC ATGACCCTCG CCCAAGCATC 
TATGACGCTT CTCAAACCCG CGTTTCTGCA GACGGCAAGT TGGTCAAGGT TTTAGCTTGG 
TACGACAATG AATGGGGCTA TTCAGTCCAA ATGTTGAATG CCGCAGAGGC TTTAATGGCT 
GTAAAGTGA
 
Protein sequence
MTIRVAINGY GRIGRMVLRA LYEDQVNGKP RRDIKIVAIN AMGDIDINAH LTQYDSAHGR 
FPAEVSVDGD HMVVNGDRIK MFSTRNPLET PWGELGVDLV LECSGKFTSK EKAMVHISQG 
AKKVLISAPG EKDVDATIVY GVNQNVLKPS DVVVSNASCT TNCLAPLVKP LLEKIGIESG 
LMTTIHAFTN DQVLTDVYHK DMRRARSAVT SMIPTKTGAA KAVGLVLPAL AGRFDGFAMR 
VPVINVSVVD LTFAASRATS VDEVNSILKT ASEGELKGIL GFNTLPLVSI DFNHDPRPSI 
YDASQTRVSA DGKLVKVLAW YDNEWGYSVQ MLNAAEALMA VK