Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0165 |
Symbol | |
ID | 5052443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 159494 |
End bp | 161116 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640470317 |
Product | UDP-N-acetylmuramoylalanine--D-glutamate ligase |
Protein accession | YP_001154950 |
Protein GI | 145588353 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGAACC TAGAAAACAC TTTCGCCAAC CCACTGGCTA TCGCCAATGC AGACTATCAA GCCCCCAATC GCTTTTTGAT TATGGGTTTA GGTGAATCCG GTATTGCCAT GGCTAGATGG TGCCTGCGTA ATGGTGCTGC AGTTCGTTTG GTCGACACAC GTGACCGATC TTCTTTAAGT GAGCGTCAAT TGGCTTTGCT TGCTGAGCTC GAGTTTGCAG GCCTTAAAGA TATTCACTTT GGCCCTTTAG GTGATGATCT ACTGGTTGAT ATAGATGTTA TCGGTATCAG TCCTGGTCTA TCACCCCTTC AAGAGCCTAC CCAATCATTC TTAGTCAATG CTAGAAAATC TCGTATTGAT ATTTGGAGTG AAATAGAATT TTTTGCCCGG GCAATTGCTG CATTAAGTCG CATGGCACAA ACAAATGAAT CTAGCTATGC CGCCAAAGTA TTGGCGGTTA CGGGTACCAA TGGAAAAACT ACAACAACCG CATTAACAGG TCAACTTTGT GAGCGGGCTG GAAAACGAGT AGCTGTCGCA GGAAATATTA GTCCTGCGGC ACTCGATAAG CTCATGAGTT GTCTAGAAGC TGCAGATCAA CTAGAAGATA TGCCTGATGT TTGGGTTTTA GAGCTATCCA GCTTCCAATT GGTTTATACA AGCAGCTTGA ATCCGACAGC CGCTGCTGTT CTGAATATTA CGCAAGACCA TTTGGACTGG CACGGTGAGA TGTCAGCTTA TGTTGAGGCG AAATCTAAGA TATTTGGTAG CGATACTATT TGCGTCTTAA ATCGAGATGA TTCCTTGGTG ATGGGATTGT TTTCTGAAGA GCAAAAAGCA GAAAAATTTA CTGTCACGTT TGGATCCAAT AGGCCGGATG AGCAAGGCGC ATTTGGTATC GAGCATGATT TACGTGCTGG TGGAATTGAT TGGCTGGTAT GGGCTGAAGT GGATGAAGAT CTCGAGCCAA AACCAAAGCG CCGTCGTAAA TCAGCTGTGA TTGAGGAGGA TGAGCCTTTA CGTTTGAAGC GTTTAATTCC TGCAGATGCT TTACGTATTC GTGGACGTCA CAATGCATTA AATGCACTAG CAGCCCTTGC CTTAGCGCGC GCTGCTAACT TACCGATGAA TGTCCTCTTG CATGGCTTAC GTGATTACCA TGGTGAGCCG CATCGTGTAC AAAGCATAGC AATAGTAAAT GATGTTGAAT ATGTGGATGA CAGTAAAGGT ACTAATGTAG GTGCTACTGT CGCGGCAATC AATGGCTTGG GTAGCAATGA GTCTGGAAAA AGAATTTGGT TGATTGCTGG TGGAGAAGGT AAGGGACAAG ACTTTAGTCC ATTACGTGAA CCAGCGCTGC GATTCGTAAA AGGTGTTTTT GTCATAGGTA AAGATGGCGA CAAAATTGTT GAGGCTATGG GGTCAGATAT TCCGTGTACC AATAGCAAAA CTTTGCAAAT GGCGGTTCAA GCCGCAGCCG CTCAAGCAGT GTCAGGTGAT TTAGTTTTAT TGTCACCGGC TTGCGCAAGC CTAGATCAGT TCCGCGATTA TGTAGAACGT GCACAAGTTT TTATCTCGGA AGTTGAAGAG TTGGGAATGC GTTTCGAAGG AGTTCAGGCA TGA
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Protein sequence | MLNLENTFAN PLAIANADYQ APNRFLIMGL GESGIAMARW CLRNGAAVRL VDTRDRSSLS ERQLALLAEL EFAGLKDIHF GPLGDDLLVD IDVIGISPGL SPLQEPTQSF LVNARKSRID IWSEIEFFAR AIAALSRMAQ TNESSYAAKV LAVTGTNGKT TTTALTGQLC ERAGKRVAVA GNISPAALDK LMSCLEAADQ LEDMPDVWVL ELSSFQLVYT SSLNPTAAAV LNITQDHLDW HGEMSAYVEA KSKIFGSDTI CVLNRDDSLV MGLFSEEQKA EKFTVTFGSN RPDEQGAFGI EHDLRAGGID WLVWAEVDED LEPKPKRRRK SAVIEEDEPL RLKRLIPADA LRIRGRHNAL NALAALALAR AANLPMNVLL HGLRDYHGEP HRVQSIAIVN DVEYVDDSKG TNVGATVAAI NGLGSNESGK RIWLIAGGEG KGQDFSPLRE PALRFVKGVF VIGKDGDKIV EAMGSDIPCT NSKTLQMAVQ AAAAQAVSGD LVLLSPACAS LDQFRDYVER AQVFISEVEE LGMRFEGVQA
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