| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0138 |
|---|
| Symbol | |
|---|
| ID | 5051970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 132189 |
|---|
| End bp | 132983 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640470290 |
|---|
| Product | uracil-DNA glycosylase superfamily protein |
|---|
| Protein accession | YP_001154923 |
|---|
| Protein GI | 145588326 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0692] Uracil DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00628] uracil-DNA glycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0590292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCTT TTTCTAAGAG CGATATTCCT GAGGATTGGC GCGCACTACT AGGCGACTAC
TTTGATTCAC CTGCCTGGAA GCAATTAGAA CTTAATCTGC AGTCCATTCT AGACAGTGCG
CCTGCAAGCA TTTACCCCCA GCCTGAGCAT TTCTTTAAAG CTTTAAAACT AACTCCAGTC
GATTCAGTCA AAGTAGTCAT CCTCGGACAA GATCCGTATC ACTCGCCCGG ATTGGCACAA
GGCTTGGCAT TCTCCATTCC CGCTGATATC CCTTTAAACT CCCGTGCGTT TCCAAGTTCA
TTACGCAATA TCAGCAAGGC ACTCGCTCTT GAGGGGTTTG GTGGATTGCC AAACGGTGAC
TTACATTCAT GGGCACAACA AGGCGTGCTT CTCCTAAATA CAGCACTCAG CGTAAAACCA
GGCGAAGCGG GAAGTCATGC CAATCTAGGA TGGAAAAGCC TGATTGATTG TTTAATCACT
CAGCTCGCCT TACAAAAACC TTCTTTAGTG TGGATGCTTT GGGGAGGTCA TGCTCAATCC
AAGCTCCCAT TAATTGAATC TGGTATTGAC CAACTCATTT TGCAATCTTC CCACCCTTCT
GGATTGGGCG TTTACAAAAC CGACAAGCCT TTTTTAGAAC CTGGTGCACA CGCTAGTTGT
AAACACTTCA CCAAAGCAAA TGAGTGGCTT ACTGGCCATC ATCAGGCGCC CATTCAATGG
ATTAGTTTAA ATAGCGCGGT AAATGGCATT CAGGTGGATT TATTTAGCCA AAGCGGTAAA
AATACAGCCC ACTAG
|
|---|
| Protein sequence | MPSFSKSDIP EDWRALLGDY FDSPAWKQLE LNLQSILDSA PASIYPQPEH FFKALKLTPV
DSVKVVILGQ DPYHSPGLAQ GLAFSIPADI PLNSRAFPSS LRNISKALAL EGFGGLPNGD
LHSWAQQGVL LLNTALSVKP GEAGSHANLG WKSLIDCLIT QLALQKPSLV WMLWGGHAQS
KLPLIESGID QLILQSSHPS GLGVYKTDKP FLEPGAHASC KHFTKANEWL TGHHQAPIQW
ISLNSAVNGI QVDLFSQSGK NTAH
|
|---|
| |