| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1779 |
|---|
| Symbol | |
|---|
| ID | 6184607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1550147 |
|---|
| End bp | 1550632 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641672277 |
|---|
| Product | SMF family protein |
|---|
| Protein accession | YP_001798446 |
|---|
| Protein GI | 171464333 |
|---|
| COG category | [L] Replication, recombination and repair
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
|---|
| TIGRFAM ID | [TIGR00732] DNA protecting protein DprA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTCAAG AAAAAGCGGG CGCCCTAATT ATCTCTGGCA TGGCAAAAGG GATTGATAGT
GCTGCGCACC TTGCCGTCAT TGAGCTTGGC CCTAGCCACC TAACCGCCGC AGTACTGGGA
ACTGGTGTAG ACCTTGTGTA CCCCCGGCAA AACATCAGCT TAGCCCAAGC TATAGGTCAA
CAGGGGCTTT TGGTCTCTGA GTTGCCCCTG GGTGTGGGAC CTCAAGTGTG GCACTTTCCC
AGGCGCAATC GCCTAATTGC AGCCATAGCA CTCGGGGTGG TTGTGGTTGA GGCAGCCGAA
AAGTCCGACT CCCTCATCAC CGCAAGACTG GCAGCAGATT TTGGCAGAGA GGTTTTTGCC
CTTCCAGGAC CCATAGATAG TCTCAGCCAC CTGCTAATTC AACAAGGGGC AAAACTGGCC
TTTAAGCCAA GCGATGTTAT TGAGGAGCTG GCTTTTTACC TAAAAACCCC GTTTAAACAG
GTTTAA
|
|---|
| Protein sequence | MAQEKAGALI ISGMAKGIDS AAHLAVIELG PSHLTAAVLG TGVDLVYPRQ NISLAQAIGQ
QGLLVSELPL GVGPQVWHFP RRNRLIAAIA LGVVVVEAAE KSDSLITARL AADFGREVFA
LPGPIDSLSH LLIQQGAKLA FKPSDVIEEL AFYLKTPFKQ V
|
|---|
| |