| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1617 |
|---|
| Symbol | |
|---|
| ID | 6183923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1420527 |
|---|
| End bp | 1420850 |
|---|
| Gene Length | 324 bp |
|---|
| Protein Length | 107 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641672134 |
|---|
| Product | sigma 54 modulation protein/ribosomal protein S30EA |
|---|
| Protein accession | YP_001798305 |
|---|
| Protein GI | 171464192 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
|---|
| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAA AAATTAATAG CCGTCATGTA GAAGTTACGC CCGCAATGCG CTCACATCTT
GAGGCGGGTC TAGCCAAAAT TCGTAAGCAC TTTGACCATG TTATTGATGC GTCAGCCTTC
CTGGTGGTTG ATAAAGCCAA AGAAAAGGAT CTTCGTCAAA GCGCTGAGAT CACTATTCAC
CTCAAAGGAA AGGATTTATT TGCTGAAGCA CACAACGCCG ACCTTTACCA CGCAATGGAT
GCAGTGGTTG ATAAGCTGGA GCGTCAGGTT GTCAAACATA AAGAAAAAAT CCAAGATCAC
CATCACGAAA AGCATTTTGA GTGA
|
|---|
| Protein sequence | MNLKINSRHV EVTPAMRSHL EAGLAKIRKH FDHVIDASAF LVVDKAKEKD LRQSAEITIH
LKGKDLFAEA HNADLYHAMD AVVDKLERQV VKHKEKIQDH HHEKHFE
|
|---|
| |