| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1579 |
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| Symbol | |
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| ID | 6183247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1379743 |
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| End bp | 1380759 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641672099 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_001798270 |
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| Protein GI | 171464157 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.637101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 0.403253 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATTG GCCCTCACAC CCTTGCAAAT AAACTATTTG TGGCTCCTAT GGCTGGGGTA
ACGGATCGTC CTTTTAGGCA ACTTTGCAAG AAGTTGGGCG CTGATTATGC CGTATCTGAA
ATGGTGGCCT CCAACGCCCT GCTTTGGAAA AGCGAGAAAA CCCAACGTCG CGCAAATCAC
ATCGGCGAAT TTAAACTCAT CGCAGTCCAA ATTGCAGGCG CCGATCCAGC AATGATGGCG
GCAGCGGCAA AAATCAATGT AGATCACGGC GCGCAAATTA TTGATATCAA TATGGGTTGT
CCTGCAAAAA AGGTTTGCAA TGTTGCCGCG GGCTCAGCCT TACTTCGTGA TGAGCCATTG
GTGCAGCAAA TCTTAGAAGC TGTTGTTAAC GCTGTAGGTA TTGGTCCAGA TGCTGTGCCA
GTGACACTAA AGATTCGCAC TGGATGGGAT CGTCAAAATA AAAATGCCAT AGAGATTGCG
CAACTTGCCG AGAAATCTGG CATTTCCATG CTGACCGTTC ATGGCCGTAC TAGGGCAGAT
CTCTATCATG GTGAAGCCGA ATATGAAACG ATTACCACAG TCAAAAATTA TGTACGCATT
CCGGTAGTTG CCAATGGCGA CATTAATAGC CCAGAGAAAG CAGAGCAAGT ATTAAAAATT
ACCGGCGCTG ATGCCATCAT GATAGGACGT GCCGCCCAAG GACGACCCTG GATCTTCCGC
GAGATCAATC ACTACCTTGA AACTGGCGGC AAGTTGCCAA CCCCTAAGAT CAATGAGATA
CAGACCATCA TGAATGCTCA TCTCTTGGAC CATTACGAGT TCTATGGAGA ACATATTGGC
CTACGTACAG CCCGCAAGCA TATTGGCTGG TATTGCAAAG GGCTGCGTGA TTCTCATGCT
TTCCGCCAAC GCATGAATAC TGCTGATGAT TGCAAAACCC AATTGCAAAT GGTCAATGAC
TATTTTGATG AGATGAAATC TCACTCTGAC CGCTTGTTAT TTTTAGAGGC AGCTTAA
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| Protein sequence | MNIGPHTLAN KLFVAPMAGV TDRPFRQLCK KLGADYAVSE MVASNALLWK SEKTQRRANH
IGEFKLIAVQ IAGADPAMMA AAAKINVDHG AQIIDINMGC PAKKVCNVAA GSALLRDEPL
VQQILEAVVN AVGIGPDAVP VTLKIRTGWD RQNKNAIEIA QLAEKSGISM LTVHGRTRAD
LYHGEAEYET ITTVKNYVRI PVVANGDINS PEKAEQVLKI TGADAIMIGR AAQGRPWIFR
EINHYLETGG KLPTPKINEI QTIMNAHLLD HYEFYGEHIG LRTARKHIGW YCKGLRDSHA
FRQRMNTADD CKTQLQMVND YFDEMKSHSD RLLFLEAA
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