| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1463 |
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| Symbol | |
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| ID | 6182949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1264182 |
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| End bp | 1266488 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671999 |
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| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
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| Protein accession | YP_001798171 |
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| Protein GI | 171464058 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00833738 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.501443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCCC AAGAATTAGA AATGAGTTTG CACATGGCGT TTGTTGACGC AAGGGCATCG
AGACATGAGT TCATTACGGT CGAGCATTTG CTCGCAGCCT TGTTAGACAA CGCTACTGTG
GTAGAGGTCT TAAAGGCTTG CGCTGTCAAT ATCGCAGAGT TGCGCGCTCA GCTGAAAAAC
TTCATTAATG ACAATACTCC AGTGGTGCCG GGAAATGATG AAGTTGATAC GCAGCCGACA
CTTGGCTTTC AGCGTGTTAT TCAACGCGCC ATCATGCACG TTCAATCGAC ATCAAATGGT
AAGAAAGAAG TTGCTGGCGC AAATGTGCTG GTCGCCATCT TCGGTGAAAA AGATTCGCAC
GCGGTGTATT TCTTGCAACA GCAAGGTGTT ACTCGTTTAG AAGTGGTGAA CTTCATCAGC
CATGGCGTTC GTGAAGATCA ATCCGAGCAT GTAAAACCAG TTGAGCCTAC TCAAGAGACT
GAGGATGCTG GCTCTTCTGG CAAAGAAAGC CCTCTAGAGC AGTACACGCA GAACCTCAAC
GCATTGGCCC GTCAAGGCAA GATAGATCCG TTGATTGGGC GCGAGAGCGA GGTAGAGCGC
GTTATACAGG TGTTATGCCG TCGTCGCAAA AACAATCCCT TATTGGTGGG CGAGGCTGGC
GTGGGCAAGA CGGCGATTGC TGAGGGCTTA GCCTGGAGAA TTGTTAAGGG CGATGTCCCA
GAAATTTTGG CAAATGCAAC TGTGTACTCA TTAGATATGG GCGCTCTTTT GGCGAGCACT
AAATATCGTG GTGATTTTGA GCAACGCTTG AAGAGCGTTC TTAAGTCCCT CAAAGATCAC
GCTCATGGCA TTTTGTTTAT TGATGAGATT CATACGTTAA TCGGTGCGGG TGCAGCATCT
GGCGGAACCC TGGATGCAAG TAATTTATTA AAGCCTGCAT TGTCTAATGG TCAGCTTAAA
TGTATCGGTG CAACAACCTT TACGGAATAT CGCGGTATTT TTGAAAAGGA TGCCGCACTG
TCACGACGTT TCCAGAAGGT CGACGTAGTT GAGCCAACAG TAGATCAAAC AGTGCAAATC
TTGCGTGGCT TGAAGTCTCG TTTTGAAGAA CACCATAGCG TGAAGTATGC GGCCGGCGCT
TTAGTGGCCG CTGCAGAACT TTCTGCTCGC TATATTAATG ACCGTCACTT GCCTGACAAG
GCGATCGATG TCATTGACGA GGCTGGTGCT GCCCAACGTA TTTTGCCGAA GTCTAAGCAA
AAGAAAACCA TTGGTCGCCC AGAGATCGAA GAGATTGTTG CAAAGATTGC ACGCATACCG
CCACAGTCCG TTACTGTGGA CGATCGCAGC AAGTTGCAGA TCCTAGATCG TGACATCAAG
AGCGTGGTCT TCGGTCAGGA CCCTGCGATT GAGGCTTTGG CTGGCGCCAT TAAGATGACG
CGAGCAGGTC TTGGCAAGAT TGATCGCCCA ATTGGTTCAT TCCTATTTTC TGGCCTGACT
GGGGTGGGTA AGACCGAAGT TGCTAAACAA CTTGCTTATA TCTTGGGTAT CGAATTACTA
CGTTTTGATA TGTCTGAGTA CATGGAGCGT CATGCAGTTA GCCGTTTGAT TGGTGCGCCT
CCGGGTTATG CAGGCTTTGA TCAAGGGGGT TTGCTGACAG AGGCTGTTAA TAAGAAGCCG
CATTGTGTAC TCTTGCTTGA CGAGATTGAA AAAGCCCATC CAGATATTTT CAATATTCTG
TTGCAGGTAA TGGATCATGG AACATTGACA GATAACAATG GTCGCAAAAC TGATTTCCGT
AACGTGATCA TCATCATGAC TACGAATGCT GGTGCTGAAG CCATGCAGAA GTCCACTATT
GGCTTTACTA ATGCCCGTGA GTCTGGTGAT GAAATGGCGG ATATTAAAAA GTTCTTTACA
CCTGAGTTCC GCAATCGTTT AGATGCCATT GTCTCTTTCA GGGCGCTTGA TGAGTCCATC
ATCATGCGCG TGGTGGATAA GTTCTTAATG CAACTTGAAG AGCAATTGCA CGAGAAAAAA
GTGGATGCCA CTTTCAGTGC TGCCTTGCGT GCGCATTTGG CTAAGCATGG CTTTGATCCT
TTAATGGGCG CTCGTCCAAT GCAGCGCATC ATTCAGGACA CTGTGCGTAA AGCGCTTGCT
GATGAGCTGC TGTTTGGCAA GTTGGCTCAA GGCGGTTATG TGGATGTGGA TATTGATGCT
GATGGTAAAG TTTTACTGAA TTTTGATGCG CCGGTATTGC CAGGAAAGCA GGCTAAGGCT
GATATAGCTC CGGCTGAAGA AATTTGA
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| Protein sequence | MIAQELEMSL HMAFVDARAS RHEFITVEHL LAALLDNATV VEVLKACAVN IAELRAQLKN
FINDNTPVVP GNDEVDTQPT LGFQRVIQRA IMHVQSTSNG KKEVAGANVL VAIFGEKDSH
AVYFLQQQGV TRLEVVNFIS HGVREDQSEH VKPVEPTQET EDAGSSGKES PLEQYTQNLN
ALARQGKIDP LIGRESEVER VIQVLCRRRK NNPLLVGEAG VGKTAIAEGL AWRIVKGDVP
EILANATVYS LDMGALLAST KYRGDFEQRL KSVLKSLKDH AHGILFIDEI HTLIGAGAAS
GGTLDASNLL KPALSNGQLK CIGATTFTEY RGIFEKDAAL SRRFQKVDVV EPTVDQTVQI
LRGLKSRFEE HHSVKYAAGA LVAAAELSAR YINDRHLPDK AIDVIDEAGA AQRILPKSKQ
KKTIGRPEIE EIVAKIARIP PQSVTVDDRS KLQILDRDIK SVVFGQDPAI EALAGAIKMT
RAGLGKIDRP IGSFLFSGLT GVGKTEVAKQ LAYILGIELL RFDMSEYMER HAVSRLIGAP
PGYAGFDQGG LLTEAVNKKP HCVLLLDEIE KAHPDIFNIL LQVMDHGTLT DNNGRKTDFR
NVIIIMTTNA GAEAMQKSTI GFTNARESGD EMADIKKFFT PEFRNRLDAI VSFRALDESI
IMRVVDKFLM QLEEQLHEKK VDATFSAALR AHLAKHGFDP LMGARPMQRI IQDTVRKALA
DELLFGKLAQ GGYVDVDIDA DGKVLLNFDA PVLPGKQAKA DIAPAEEI
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