Gene Pnec_1395 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1395 
Symbol 
ID6183283 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp1196290 
End bp1196976 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content44% 
IMG OID641671940 
Productputative lipoprotein 
Protein accessionYP_001798113 
Protein GI171464000 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.483754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones83 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCTCA CGCCGCATAA AACTGTTCTA ACCATTCCAA TTCTTAAAAT GACTATTGCA 
CTTACATCGC TCTCAAAAAT TATTGCCGTC ACTTTAATTG CGGCTGCCTT TCTAGTCAGT 
TGTCAATCCA CTGGACCAAA TGATAAGCCG CTAACTCTTG TGGAAATTAG TCAAAAACGC 
GATGCCACTT TAAAGATGGC TAAAACTGGT CTTGATGCTT TGATTAAGAA AAATCCAGCA 
GTTCAGAAAG AAATTGATCA ATCGGCTGGT TATGCGGTTT TTACCACTAC GAATGTGAAT 
GTATTTTTGC TGGTAGTAGC CCGTGGAGAG GGTGTGCTGT TTGATAAACG GCGTAAAGAC 
CCTATCTTTA TGCAAGCGCT GAAGACAGGT GAAGGCCTCG GAGCCGGCTA TCAAGACCAA 
TATCAAGTGG CAATCTTTAA GTCGCCCGCT GCCATTGATC AATTTCTGTT GACCTCGATT 
GATGGTCAGC GTGGTGGTGT TGATGTGGAT GCTAATTTCT CCGCAGGTTC TGGGGGCACC 
ATTCGCTCTT TCAATCCCGA AATCACCTTC TATACCGTGG GACTCTCCGG ATATGATCTG 
CAGGCGAACT ACGGGGGCAC TCTCTACCTG GTTGATCAGC AGCTAAATAA TGCTGCAACG 
CTAAATAACC TTCCAAAGAA AAAATAA
 
Protein sequence
MLLTPHKTVL TIPILKMTIA LTSLSKIIAV TLIAAAFLVS CQSTGPNDKP LTLVEISQKR 
DATLKMAKTG LDALIKKNPA VQKEIDQSAG YAVFTTTNVN VFLLVVARGE GVLFDKRRKD 
PIFMQALKTG EGLGAGYQDQ YQVAIFKSPA AIDQFLLTSI DGQRGGVDVD ANFSAGSGGT 
IRSFNPEITF YTVGLSGYDL QANYGGTLYL VDQQLNNAAT LNNLPKKK