| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1236 |
|---|
| Symbol | |
|---|
| ID | 6183366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1068797 |
|---|
| End bp | 1069390 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641671811 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001797986 |
|---|
| Protein GI | 171463873 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.467034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCC ATCAATTCCG TTTTGTACGC GAAGCCGTTA GACAAAACTT CAACTTAACC
ACCGCTGCCA AAGCCCTCTT TACCTCCCAG CCAGGGGTAT CTAAGGCGAT TATCGAATTG
GAAGATGAGC TAGGTGTTGA GATCTTTCGT CGCCACGGCA AACGCATTCG ATCCCTTACG
GAACCACGCA AACGCATTTT GAGTTCGATT GAACGCATCT TGGATGAAGT TGAAACATTA
AAACGGGTGG GCAAGGATTT TGCCAGCCAA GATCAAGGCA GCTTTATTAT TGCCACCACT
CATACGCAAG CGCGTTATGC CTTGCCAAAA GTACTTACTG AATTTACTAA GCGCTTTCCA
AAAGTAAAAG TTAGTATTCA ACAAGGCAGC CCTGGCCAAA TTGCAGAATT ACTCACACAT
GATCGTGCGG ACATCGCAAT CGCAACAGAG GGCATTGCCA ATACTCCAGG CGTTCTCGCA
CTACCAGTGC TATCAGTGGC ATCACGTGCT GATGGTGCCA TTAAGTCATC CGCTGCTCAA
CCAAGCCACA CTGACGCTGG AGGAGATTGC CAAGTACCCC ATCATCACGT ATGA
|
|---|
| Protein sequence | MNLHQFRFVR EAVRQNFNLT TAAKALFTSQ PGVSKAIIEL EDELGVEIFR RHGKRIRSLT
EPRKRILSSI ERILDEVETL KRVGKDFASQ DQGSFIIATT HTQARYALPK VLTEFTKRFP
KVKVSIQQGS PGQIAELLTH DRADIAIATE GIANTPGVLA LPVLSVASRA DGAIKSSAAQ
PSHTDAGGDC QVPHHHV
|
|---|
| |