| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1159 |
|---|
| Symbol | |
|---|
| ID | 6183682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1003613 |
|---|
| End bp | 1004923 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671756 |
|---|
| Product | seryl-tRNA synthetase |
|---|
| Protein accession | YP_001797932 |
|---|
| Protein GI | 171463819 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0172] Seryl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.0553122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGATC CGCAATTACT CCGTAAAGAT ATCGCCGCAG TTGCTGCACG CCTAGCTACT
CGCAAATTCC AATTGGATGT TGAGAAATTC AACGCCCTAG AATCGGAGCG AAAATCTCTA
CAAACCCGTA CTGAAGAACT GCAGGCCAAA CGTAATCAAT TGTCTAAAGC GATTGGTATG
AAAAAAGGTA AGGGCGAAGG CGCCGCTGCT GAGATGGCTG AGGTTACGCA AGTTAACGCA
GACATGGAAT CTGGTTCATC ACGCTTAGCA GTATTGCAGG CTGAGATTTC TGATTTCTTG
ATGGGTATTC CGAATCTCCC GGATGAGTCT GTACCTGCCA GTAAAGATGA AACAGAAAAT
AAAGAAGTGA AACGCTGGGG CGAGCAGCCT ATTTTTGATT TTGAGGTTAA AGATCATGTT
GACCTTGGTG GTCCATTGGG CTTGGATTTT GAAGTGGCAG CCAAGATCAG TGGTTCCCGC
TTTATCGTAC TCAAGGGGCC GATTGCAAGA TTGCATCGTG CCTTAGCGCA ATTCATGATT
GATACGCACG CTACTGAGCA TCAGTACCAA GAAGTTTATG CGCCTTATAT GGTGAATGCT
GCATCAATGC GCGGTACTGG TCAGTTACCC AAGTTTGAAG AGGACTTATT CAAAGTTCCG
CGTCAAATGG GTGGCGAGGA TGGTAATGGA GAGGCCAAAA CTGAAAACTT TTACCTTATT
CCAACAGCTG AAGTTCCTGT TACCAATCTA GTTCGAGATG AAATTGTGAA CACCGACAAT
CTGCCAATGA AGTTTGTCGC TCACACACCT TGCTTTCGAT CAGAGGCAGG TAGCTATGGT
CGTGACGTAC GCGGCATGAT TCGTCAGCAT CAGTTTGACA AAGTAGAGTT GGTGCAAATT
ACTAAGCCAG AAGATTCAAT GCAGGCTTTG GAGGATCTCA CAGGCCATGC AGAAAGAATC
CTAGAGCTTT TAGAGCTGCC TTATAGAAAA GTATTGCTCT GTACTGGCGA CATGGGCTTT
GGTAGCACTA AGACTTATGA CCTAGAAGTT TGGGTGCCGT CACAAAATGC CTATAGAGAA
ATTAGTTCAT GCTCTAGCAT GGGCGATTTC CAGGCAAGAC GTATGCAAGC TAGATTTAAA
GTGGGTCAAG GCAAGCCTGA ACTGGTTCAT ACTTTAAATG GTTCAGGCCT AGCCGTAGGC
AGGGCGTTAG TTGCATTGTT AGAGAATAAG CAACAGGTTG ATGGCAGCAT TGCTATTCCT
AAAGCACTGC AACCCTACTT GGGTGGTTTA GAAGTTCTCA AGCCAATTTA A
|
|---|
| Protein sequence | MIDPQLLRKD IAAVAARLAT RKFQLDVEKF NALESERKSL QTRTEELQAK RNQLSKAIGM
KKGKGEGAAA EMAEVTQVNA DMESGSSRLA VLQAEISDFL MGIPNLPDES VPASKDETEN
KEVKRWGEQP IFDFEVKDHV DLGGPLGLDF EVAAKISGSR FIVLKGPIAR LHRALAQFMI
DTHATEHQYQ EVYAPYMVNA ASMRGTGQLP KFEEDLFKVP RQMGGEDGNG EAKTENFYLI
PTAEVPVTNL VRDEIVNTDN LPMKFVAHTP CFRSEAGSYG RDVRGMIRQH QFDKVELVQI
TKPEDSMQAL EDLTGHAERI LELLELPYRK VLLCTGDMGF GSTKTYDLEV WVPSQNAYRE
ISSCSSMGDF QARRMQARFK VGQGKPELVH TLNGSGLAVG RALVALLENK QQVDGSIAIP
KALQPYLGGL EVLKPI
|
|---|
| |