| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0809 |
|---|
| Symbol | |
|---|
| ID | 6182877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 693905 |
|---|
| End bp | 694339 |
|---|
| Gene Length | 435 bp |
|---|
| Protein Length | 144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671438 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_001797628 |
|---|
| Protein GI | 171463515 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.451966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCAG CCCAAGAACT ATCTGACTTT CTCAGCAGTG TCGAGCAGCG CGCTTTTAAA
CAGGCGGTCT ACGCTGTGCG TGACGATGAT GCTGCCTTGA ATATTGTTCA AGATGTCATG
ATCAAATTAG CTGAGAAATA CGGGGATAGA CCTGCGACTG AGCTCCCCCT AGTTTTCTCC
AGAATTTTGC AAAACCGGAT TCATGACTGG TTTAGAAGGC AAAAAGTCCG AAATATCTGG
GTGACCCTTT TTTCCAATAT GGGTAAAAAA GGCGATGAAA ACGATGATTT CGACCCTTTA
GAGTCCCTAT CAGCCCCAGA TGACAGTGAA ATTCACCAAG ATGGGGCTCA AAAGCTGGGA
AAAAAAGTCA GGTTTTACAG TCCCTGGAGT CAGAAATATC TAAATTGCCC GTACGTCAAC
GAGAAGCCTT CCTGA
|
|---|
| Protein sequence | MASAQELSDF LSSVEQRAFK QAVYAVRDDD AALNIVQDVM IKLAEKYGDR PATELPLVFS
RILQNRIHDW FRRQKVRNIW VTLFSNMGKK GDENDDFDPL ESLSAPDDSE IHQDGAQKLG
KKVRFYSPWS QKYLNCPYVN EKPS
|
|---|
| |