| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0702 |
|---|
| Symbol | |
|---|
| ID | 6182974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 611242 |
|---|
| End bp | 613380 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671351 |
|---|
| Product | Oligopeptidase A |
|---|
| Protein accession | YP_001797546 |
|---|
| Protein GI | 171463433 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0339] Zn-dependent oligopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.713847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 0.266777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATAT CCCCATCTAC ACCCCTCGTT AGCACCATTC CCCCAGAGAT GAAAAGTAAT
CCCCTAATTT CATTTGGGCG TGGCATTGCC GCTTACTCAG AAGTGAAGCC TGAGCATATC
GCCCCAGCAA TTGAATACCT ATTAAAACAA GCGCAAGATG CTGTCGACCT GGCCGCAAAT
ATCACTACCG CACCAACTTG GAATACGCTG GCCGAACCCC TTGAAGATGC TACAGAGTCT
TTAGGCAGAT CGTGGGGCGT GATCTCGCAT TTAAATAGTG TTGCCGATAC ACCAGAGTTA
CGAGCCGCAT ATGGTGAAAT GTTGCCTAAA ATTACAGCCT TCTTTTCGAG CCTTGGTCAG
AACTTAGACC TCTATAAGAA ATTTAAAGAG CTCAGTAAAG CTCCTGAATT TAGCAAATTG
AGTTCCGCCC AGAAAAAGGT CATTGAAAAC TCCTTGCGCG ATTTTCATCT TGGTGGCGCC
GAATTGAGTG ATGCAGATAA ACCGCGCTTT GCTCAAATTC AAGATGAACA AGCAATTCTA
AGTAAGGCCT TTTCTGACCA TGTATTAGAT GCAACCGACA GCTTTGTACA TCTTGTGACA
GATAGATCCG ATTTGGTCGG ACTACCTGAA GATGCCATTG CAGCAACAGC CGATACTGCT
CAACAAAAGA ATTTACAGGG GTGGGCATTT ACCCTGCACT TCCCCTCCTA TTACCCAATC
ATGCAGTATT CTGAGAATCG TGCACTGCGT CGCTTGATGT ATGAAGCTTA TGTCACCCGA
GCATCAGAAC TGGCACCCCA ATACGCCAAG GGCAAACTGG ATTGGGATAA CACGCAAAAT
ATGCTTGAGC AGCTCAGGCT GCGTGATGAG GAAGCCCATA TGCTGGGTTT TAAAAACTAT
GCTGCACTCA GCCTGGCACC AAAGATGACC AATAGCGTCG AAGAAGTGGA TTCCTTCTTG
ACTAATTTTG CACAAAAGGC AAAACCGTTT GCGATTAAAG ACTGGCAAGA GCTTTCCGAA
TTTGCGAAAA CAGAATTATC GATTACCGAT GGACTAGAGC CATGGGATAT TGCATTTGCT
TCCGAAAGAT TAAAGCAAGA GCGCTATTCA TTTTCTGAAA ATGAACTTAA GCAATACTTT
CCATTACCTA AAGTATTGGA TGGATTATTC CAGGTCATTC AGACTCTCTT TGGAGTAAAG
ATTGAAGCAT CTGACCTACC TACATGGCAT GCCGATGTGC AATCCTTCTC AGTAAAAAAT
GTCAAGGGTA ATGTTGTAGC CTATTTTTAC CTCGACCCCT ACGCTCGCCC TGGCAAGCGT
GGTGGTGCCT GGATGGATGA CGCGCGCGGT CGCAGAGTAT TGCCTAATGG AGAAATTCAA
GTACCCGTAG CGTATTTAGT CTGTAACTTT GCTCCTCCAG TGAAGGTTGA TGGCGTCTTG
CGTCAGCCAA CCATCACCCA CGATGATGTG ATCACCCTCT TTCATGAGAG TGGTCACGGA
CTGCACCACC TTTTAACGCA AGTGAGCGCT TTGGGCGTTT CCGGAATCAA TGGTGTTGAA
TGGGATGCAG TTGAGCTACC AAGCCAGTTC ATGGAAAACT TCTGCTGGGA ATGGGAAGTT
TTAGAAAAAA TGACGGCACA TGCCGAAACC GGAAAACCAT TACCACGTGA ACTCTTCGAA
AAAATATTAG CTGCCAAGAA TTTCCAGAAT GGCTATATGA CACTGCGTCA AATTATGATG
TCATTAACCG ATTGGCGCCT GCATGCCAGC TTTGATGCCA AAAACGCGCA AGGTCACGCT
GTCCTTGATT TATCGAGAGC CATTGCAGAT CAATTTAATG TCATTCCGCA GCCCGCTATC
TCTCGTTGGA TTAATACCTT TAGCCATATC TTTGCTGGCG GCTATGCAGC CGGTTACTAC
AGCTACAAAT GGGCTGAAGT CTTATCGGCA GATGTTTATT CCGCCTTTGA AGAGGCAGCA
AAGCTCACTG GCAGCGTCCT AGATGAGAAA ACGGGTGCAC GTTATCGCGA AGAGATTTTG
GAGGTCGGAG GTAGTCGTCC GGCAGCAGAA TCTTTCAAAG CCTTTAGAGG CAGAGACCCG
AGCATTGACG CCTTATTAAG ACACGGGGGC TTAGCTTAG
|
|---|
| Protein sequence | MTISPSTPLV STIPPEMKSN PLISFGRGIA AYSEVKPEHI APAIEYLLKQ AQDAVDLAAN
ITTAPTWNTL AEPLEDATES LGRSWGVISH LNSVADTPEL RAAYGEMLPK ITAFFSSLGQ
NLDLYKKFKE LSKAPEFSKL SSAQKKVIEN SLRDFHLGGA ELSDADKPRF AQIQDEQAIL
SKAFSDHVLD ATDSFVHLVT DRSDLVGLPE DAIAATADTA QQKNLQGWAF TLHFPSYYPI
MQYSENRALR RLMYEAYVTR ASELAPQYAK GKLDWDNTQN MLEQLRLRDE EAHMLGFKNY
AALSLAPKMT NSVEEVDSFL TNFAQKAKPF AIKDWQELSE FAKTELSITD GLEPWDIAFA
SERLKQERYS FSENELKQYF PLPKVLDGLF QVIQTLFGVK IEASDLPTWH ADVQSFSVKN
VKGNVVAYFY LDPYARPGKR GGAWMDDARG RRVLPNGEIQ VPVAYLVCNF APPVKVDGVL
RQPTITHDDV ITLFHESGHG LHHLLTQVSA LGVSGINGVE WDAVELPSQF MENFCWEWEV
LEKMTAHAET GKPLPRELFE KILAAKNFQN GYMTLRQIMM SLTDWRLHAS FDAKNAQGHA
VLDLSRAIAD QFNVIPQPAI SRWINTFSHI FAGGYAAGYY SYKWAEVLSA DVYSAFEEAA
KLTGSVLDEK TGARYREEIL EVGGSRPAAE SFKAFRGRDP SIDALLRHGG LA
|
|---|
| |