Gene Pnec_0573 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0573 
Symbol 
ID6183761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp504556 
End bp504906 
Gene Length351 bp 
Protein Length116 aa 
Translation table11 
GC content47% 
IMG OID641671248 
Productacyl-CoA dehydrogenase domain protein 
Protein accessionYP_001797444 
Protein GI171463331 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones84 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCACC CTATTCCTAA GCCAGACCAA TATCAAGAAA TGCGCGAAGC ATTGCGTGAC 
CTCTGCGGCT CATTTGACTC AGCCTACTGG CAAAAGATTG ACCATGAGCG TGCTTATCCA
GAAGCTTTTG TTGATGCAAT GACTAAAGCA GGTTGGTTGG CTGCTTTCAT CCCAGAGGAA
TATGGTGGCT CCGGTTTAGG TCTTGCTGAA ACTTCAGTCA TCATGGAGGA AATCAATTTT
TCAGGTGGCA ACTCAGGCTC ATGCCATGGG CAGATGTACA ACATGGGCAC TTTATTGCGT
CACGGCTCAG AAGCTCAGAA AAATTACAGG CACTCCAGAA ACACCGAGTA A
 
Protein sequence
MNHPIPKPDQ YQEMREALRD LCGSFDSAYW QKIDHERAYP EAFVDAMTKA GWLAAFIPEE 
YGGSGLGLAE TSVIMEEINF SGGNSGSCHG QMYNMGTLLR HGSEAQKNYR HSRNTE