| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0334 |
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| Symbol | |
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| ID | 6183389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 296648 |
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| End bp | 297421 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641671041 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001797240 |
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| Protein GI | 171463127 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.422547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 0.568742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATCTTT CAGTAAACGA GGTTTATAAG CTTAATGAGG TTAAACCTGG GGTCCTTGTT
TTGAGTGTTG CGCTTATATT TGGCGCCTCT GGATCGATTG GAAAGGCGAT TTATCAGTAC
TTTCATGAGC GGGGCAGTCG TGTTATTGGG GTTGGCCGCT CAAATGATTC AAATCTGAAG
GCTTATTTAA TGGAATGGAT AGCTTGGACT GGAAGTGAAA GTCAACTAAA TCAAGAGTTG
GGTATCAGGC TGGTAGATAA AAAGCTTGAT TGTGTGGTCT GGGCACAAGG AATGAATTTC
AATGATAAAA TTAGTAGTTT TGACTCGACT AAGCACTTGC AAATGTATGA GGCGAATGTC
GTATTTATTT TGAAATCTCT GCACGCAATT ATGGGTGGAA ATTTTTTGGC GCAGAATGCG
AGGTTGTGCA TTATTAGTTC CATTTGGCAA AATATTGCAC GTCAAGAAAA ACTCTCCTAT
TGTGTAACAA AGTCAGCTCT TCAAGGTCTA GTTCAGTCAT TAACTGTGGA TTTAGGAAGG
GAAGGAATTC TAGTTAACGC AGTTTTGCCC GGAGCGCTTG ATACGCCCAT GACTAGGTCA
AATTTAAATT CTGCGCAACT TGAAAATTTA GAATCAGCCA CACCATTGAA AAGTCTCGCG
AACCTAGGGG ACGTTGCTGG CTTGGTTCAT TATTTATGCT CGCAAGATAA TACTGGTATA
ACTGGCCAGT TTATTGCGGC TGACAGGGGT TTTAGTAATG CTCGAATCCT TTGA
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| Protein sequence | MNLSVNEVYK LNEVKPGVLV LSVALIFGAS GSIGKAIYQY FHERGSRVIG VGRSNDSNLK
AYLMEWIAWT GSESQLNQEL GIRLVDKKLD CVVWAQGMNF NDKISSFDST KHLQMYEANV
VFILKSLHAI MGGNFLAQNA RLCIISSIWQ NIARQEKLSY CVTKSALQGL VQSLTVDLGR
EGILVNAVLP GALDTPMTRS NLNSAQLENL ESATPLKSLA NLGDVAGLVH YLCSQDNTGI
TGQFIAADRG FSNARIL
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