| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0202 |
|---|
| Symbol | |
|---|
| ID | 6183150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 183480 |
|---|
| End bp | 184079 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641670919 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001797118 |
|---|
| Protein GI | 171463005 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.277035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCATGACC GCCTAATTGC GCGCATCAAA GTTTTGGCGC GCTTAGATAT TGCTGAGAAA
CGCCTTCCTC AGGATGGGAG ACTATGTATT GGCCATAATT TCTCTAAACC CGATAGAGAT
TGTCGCGTCT CAATTCTGCC GACCCTTCAT GGGGAGAAAG CAGTTATTCG AATACTGCCA
ATCAGCCTTG AGGATCTTGA TCTCAAGGAA ATTGGCCTTC TTCCAGATCA ATTGCGCATA
TTCCAACAAG CGCTTACCCA ACCTAATGGA CTAATCCTGG TAACAGGCCC AATAGGGAGC
GGCAAAACTC GCACCCTTTA TAGCTGCCTA AGACACCTCA ACCAACCTCA TAGCAATCCT
TGCTCTATAG AAGATCCTAT TGAAATTCGT TTGCCGGGAG TAAACCAGGT TGCCTATCAC
CCCCGGGCAG GACTGGATTT TCCAACCATC ATTCGCGCCC TGCTTCGACA AGACCCTGAC
GTCATCATGA TTGGAGAAAT ACGAGATGCT GCTACCGCAC AATTAGCGAT TCAGGCAGCA
CAAACAGGGC ATCTAGTATT GAGCACGCTA CATACTCGCA ACGCTCGGGG CGCACCCTAG
|
|---|
| Protein sequence | MHDRLIARIK VLARLDIAEK RLPQDGRLCI GHNFSKPDRD CRVSILPTLH GEKAVIRILP
ISLEDLDLKE IGLLPDQLRI FQQALTQPNG LILVTGPIGS GKTRTLYSCL RHLNQPHSNP
CSIEDPIEIR LPGVNQVAYH PRAGLDFPTI IRALLRQDPD VIMIGEIRDA ATAQLAIQAA
QTGHLVLSTL HTRNARGAP
|
|---|
| |