| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0087 |
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| Symbol | |
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| ID | 6184135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 80078 |
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| End bp | 80707 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641670829 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001797029 |
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| Protein GI | 171462916 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.804652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.00443687 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTTTGA ACAAGACCAT GATGAGCTAT ACCTGGCAAA AGCTGGTCGG CAACCTGGAT
TTAGGTGGGC CTGGATTGAG CAGCTTCAAT CCAGCGACTG TGGCTGCAAC CCTAGTCTCT
CGAAATGCCA GCCGCATACT TCAAGCGGAA TTGTCCGCCC TGGAATCTGA GGGACAAGGA
AAGATTCTGT CCAATCCCCG AATTATGACT GGCGATCAAG TGAAGGCCAC CATTGAGCTA
GGTACTGAGC TCCCCTATCA AACATCCAAC CAAAACGGCA GCAAATTGCA ATTTCGAAAG
GCAAATTTAC GCCTTGAAGC TCTTCCTAAA ATTCATCCGG ATGGAAAAAT TTCCATGCTG
GTAGGTATCA ATAAAGATAC TGTTGGCATG AAAACAGAGC AGGGATATGC AATTGACACC
AAAAGCCTAA GCTCAGAGGT CACGGTTGAA AATGGCGGAA CAGCAATCAT TGGCGGCATC
CTCCAAACCA CCGAACGAGA GGATGAAGTC AAAATCCCTT TACTAGGGGA TATACCGCTC
ATTGGCCATT TTTTTCGCCA TAAATCCAAA TTACAAGATA AAACTGAATT GTTAGTCTTT
TTAACTCCAA CCGTTCTCGA TAAACCCTAA
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| Protein sequence | MTLNKTMMSY TWQKLVGNLD LGGPGLSSFN PATVAATLVS RNASRILQAE LSALESEGQG
KILSNPRIMT GDQVKATIEL GTELPYQTSN QNGSKLQFRK ANLRLEALPK IHPDGKISML
VGINKDTVGM KTEQGYAIDT KSLSSEVTVE NGGTAIIGGI LQTTEREDEV KIPLLGDIPL
IGHFFRHKSK LQDKTELLVF LTPTVLDKP
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