| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4203 |
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| Symbol | |
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| ID | 4685195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 80126 |
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| End bp | 81445 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639826063 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_973228 |
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| Protein GI | 121582786 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.139872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.82202 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG CGAACAATGC CCCTGATACC CCAGATTCCG CAGTGCCAGA CGTGCCGCCC
AAAGTGGCCC CGGAAAACGT GACGCTGCGC TCCCAGCCGC GTCCAGTTAC GCGCCTGAAC
CGACGCATGC TGGCCGTCCT CGCTGGAGGG CTGGCGACCG CCGTACTCGG TGGCACTATC
TGGTCGTTGC AATCAACGCA GCGCCGTGGC GCTGGCGACC AGAAGGAGTT GTACAACGTT
GATCGCGTGT CGCGCTCGGA AGGGCTTGAT CGACTGCCAG CGGACTATTC CAAGCTGCCG
CCGACCCTGC CAGCCCCAGT GCCACAACTC GGTGCGCCGC TGCCAGGCGA CTTGGGTGGC
CCGATCCACA AGGCCGAGCA ACAGGCGCAG GGTTATGGCT ATCAGCAGCC CGGCCATGAT
CCGGCCGAGG TTGAGCGCCT GGCGCGTTTG AAGCAGGCCG AGGAAGCGGC GGCGTCTTCA
GTGTTCTTCC GTTCGGGTGG TCAAAAGGTG GCCGCAGCCG CGCAGCCGCA GGCCTTGCCT
GTGGCCACCG CGTTGGCCGC GAATGCCGCC TTTGATCCGA TGGCCGCTGG CCCGGCATCG
ACTGCCGCGC AGTCGGCTGA CCCCACTGCG GTGCAGAACC GGCAAGACCA GAAGGAGGCG
TTTCTGTCCA AAGCCGGTTC TACGGAAACC CGTAATTCCG GCTCCCTGCA AATGTCCGCA
TCGCCGTATC AAGTCATGGC GGGCACGGTG ATCGCCGCCG CGCTGGTCAC GGGCATCAAG
TCCGACCTGC CGGGCGATGT GATCGCCACG GTGACGGAGC CGGTCTACGA CACGGCCACC
GGCAAGTACG TGCTGATCCC GCAGGGCTCG CGCCTGCTGG GCAAGTACAA CAGCCAGGTG
AGTTATGGAC AGAGCCGCGT GCAGGTGGTG TGGAATCGGG TCATCCTGCC GGATACGTCC
TCGTTCCAGC TCGACAAGCT GATCGGTACC GATCCGGCGG GCTATGCGGG TCTGGAAGAT
GGTGTGGACT GGCATTGGGA TCGCGTCTTT GCCGGTGCTG CGCTGACGAC CTTATTGGGC
ATCGGTGCCG AGCTGGCCGC ACCGGAGAAT CGCAATGGCG GCGATCGCGT AATCATCGCC
GGACGCGACA GCCTGAAGGA CTCTGTAAAC CAAGCGGGCC AAGAGATGAC CCGGCGAAAT
ATGAACATGC AGCCGACGCT AACCGAGCGA CCCGGCTTGC CGGTGCGCGT CATCGTCAAC
CGGGATCTGG TGCTGCGACC GTACCAACCA CTTTTCTTTG TGCGTGGGGG ATTGCGATGA
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| Protein sequence | MSQANNAPDT PDSAVPDVPP KVAPENVTLR SQPRPVTRLN RRMLAVLAGG LATAVLGGTI
WSLQSTQRRG AGDQKELYNV DRVSRSEGLD RLPADYSKLP PTLPAPVPQL GAPLPGDLGG
PIHKAEQQAQ GYGYQQPGHD PAEVERLARL KQAEEAAASS VFFRSGGQKV AAAAQPQALP
VATALAANAA FDPMAAGPAS TAAQSADPTA VQNRQDQKEA FLSKAGSTET RNSGSLQMSA
SPYQVMAGTV IAAALVTGIK SDLPGDVIAT VTEPVYDTAT GKYVLIPQGS RLLGKYNSQV
SYGQSRVQVV WNRVILPDTS SFQLDKLIGT DPAGYAGLED GVDWHWDRVF AGAALTTLLG
IGAELAAPEN RNGGDRVIIA GRDSLKDSVN QAGQEMTRRN MNMQPTLTER PGLPVRVIVN
RDLVLRPYQP LFFVRGGLR
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