| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4191 |
|---|
| Symbol | |
|---|
| ID | 4685377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | + |
|---|
| Start bp | 68268 |
|---|
| End bp | 69179 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639826051 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_973216 |
|---|
| Protein GI | 121582774 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.530401 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.614884 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTAC GTCATCTTCG TTGTTTTATC GCAGTGGCCG AAGAGTTGCA CTTCGCCCGT
GCGGCCGAGC GCCTGCACAT CGAGCAGTCG CCGTTGTCGC GAGCTATCAA GGAACTGGAA
TCCAACTTGG CTGTGCAGTT GTTCGAGCGG ACGACAAGAC GCACGCGGTT GACCTGGGCG
GGTAAGGTTT TTCTGGAGGA GGCCCATCGC GTCTTCGCAG CTATCGACCA AGCCAAAGCC
AGTGTCAAGG CAGCGGCTAC CGGGTACCGC GGCCGCCTGC GCATCGCTCT GTCCGATGGC
ATCGCCCAGC CACGACTATC GGCTTTGCTG GCACAGTGCC GCGAGGAGGA ACCAGAGGTA
GAGATTCGTT TGTCGGAAAC ACCGTTGTCG CAGCAGATCA AGGGGCTGAA CAGTGACCTG
TATGACGCGG GGTTTGCACA ATCCGATGAA GTGGGTGAAG GCATCATCGC TGAGGCCATC
TGGAGCGAGC CTTTGGTGAT CGCTGTACCG GCGCGCCATC CGCTCCTGGT GCACCGTCGC
ATCCCGCTCG ACGAAGTGTT GCGCTATCCG CTGGTGCTGT GCCATCCCGA AACTTGCGAA
GGTTTCTGGC AGCAGGTCAA GCGGGTGCTA CGCACGGTGG ATGCCAAGCC CATCGTGGTG
GATCGTGTGC CAACGCTGGA CTTGATGATG ACCTTGGTGG CAGCTGGTTA CGGCTTGGGG
TTCGCAGGCG AAAGCCAGAT TGCAGCATGC CGCAATCCCG ATGTGATTGC CCGCCCACTG
GCCGGTCGTT CGCCGATGCT GACCACCTAC CTGCTGCGCC CAGAAATTGA ACCTTCCGAG
CAGTTGAGCC GCTTCATCGA CAGGGTGAGC CCTGTCGATG AGCAAGCATC GAATCCCGCC
ACTGTTCAAT GA
|
|---|
| Protein sequence | MELRHLRCFI AVAEELHFAR AAERLHIEQS PLSRAIKELE SNLAVQLFER TTRRTRLTWA
GKVFLEEAHR VFAAIDQAKA SVKAAATGYR GRLRIALSDG IAQPRLSALL AQCREEEPEV
EIRLSETPLS QQIKGLNSDL YDAGFAQSDE VGEGIIAEAI WSEPLVIAVP ARHPLLVHRR
IPLDEVLRYP LVLCHPETCE GFWQQVKRVL RTVDAKPIVV DRVPTLDLMM TLVAAGYGLG
FAGESQIAAC RNPDVIARPL AGRSPMLTTY LLRPEIEPSE QLSRFIDRVS PVDEQASNPA
TVQ
|
|---|
| |