| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4170 |
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| Symbol | |
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| ID | 4685330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 40067 |
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| End bp | 40618 |
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| Gene Length | 552 bp |
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| Protein Length | 183 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639826032 |
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| Product | putative conjugal transfer TRAF transmembrane protein |
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| Protein accession | YP_973197 |
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| Protein GI | 121582755 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGCCA AACCTCGCTC GCGTCTGTGC GCTCACCTTG TGTTGGCAGT GCTGTCCACT
TGCGGCCTTG CTGCGATGGC CTGGGCATCC TTTGCGATGC CTTCGGCACA TGTCGTCTAC
AACCCGTCCA ACAGTGTGCC GGTCGGCTGG TATCGCATCG AATCGGTCAC TTCGCCAGCC
GACTCGCTGC ACGTCGGCAG CATCGTGCTG GCCCGGCTTC CGGCAGAAGC GGCCGCACTG
GCTGCGCAGC GTGGCTACCT GCCGCCACAC ATTCCGCTGC TCAAACGTAT CGGTGCGGTT
GCTCCTCAAG ACGTTTGCAT CGTCAATGGT GTTGTGCGCA TTGACGGCGT GCCGGTGGCC
GCCGTGTTGC GCACCGACCG GATGGGGCGT CCGCTGCTTT CCTGGCAGCA GTGTCGGGCG
CTTGCCGAAG GTGAACTGTT TCTGCTCAGT GTCACCAATC CGGCGTCGTT CGACAGCCGG
TATTTCGGGC CGATTGCTGC ATCCGCCGTG ATCGGTACGG CGCAGTCGGT CTACCTGGAG
AAGCAACCAT GA
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| Protein sequence | MTAKPRSRLC AHLVLAVLST CGLAAMAWAS FAMPSAHVVY NPSNSVPVGW YRIESVTSPA
DSLHVGSIVL ARLPAEAAAL AAQRGYLPPH IPLLKRIGAV APQDVCIVNG VVRIDGVPVA
AVLRTDRMGR PLLSWQQCRA LAEGELFLLS VTNPASFDSR YFGPIAASAV IGTAQSVYLE
KQP
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