| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4151 |
|---|
| Symbol | |
|---|
| ID | 4685280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | - |
|---|
| Start bp | 24295 |
|---|
| End bp | 24861 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639826015 |
|---|
| Product | benzene 1,2-dioxygenase |
|---|
| Protein accession | YP_973180 |
|---|
| Protein GI | 121582738 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG5517] Small subunit of phenylpropionate dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0735221 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.34405 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCC CATCCACCAA TTTGTTCAAA GCATTCGAAT GGCCAAGCAA AGCCGTTGGC
CTTGAGTTGC AGAACGAGAT CGAGCAGTTT TACTACCGCG AAGCGCAGTT GCTTGACCAC
CGGGCCTACG AGGCCTGGTT CGCTCTGCTG GAAAAAGACA TCCGCTACTT CATGCCGTTG
CGCACCAACC GCAGGCTCCA GGAGAGCGAA CTCGAGTATT CCGGCGACCA AGATTTCGCC
CATTTCGACG AAACCCATGA AACCATGTAC GGGCGCATCC GCAAGGTGAC CTCGGAGCTG
GGTTGGGCGG AGAACCCGCC TTCCCGTACA CGCCACCTGG TCTCCAATGT CATGGTTCGG
GAGGCGGCTG AGCCCAACAC CTTCGAAGTG AGTTCGGCCT TCATCCTGTA CCGCAATCGT
CTGGAGCGCC AGGTCGACAT TTTCGCGGGC GAGCGCCGGG ACGTCCTGCG CCGTGCCGAC
AACGGCCTGG GCTTCAAGAT CGCCAAGCGC ACCATCCTGC TCGACCAGAG CACGCTGCTG
GCGAACAACC TGAGCATGTT CTTCTGA
|
|---|
| Protein sequence | MTTPSTNLFK AFEWPSKAVG LELQNEIEQF YYREAQLLDH RAYEAWFALL EKDIRYFMPL
RTNRRLQESE LEYSGDQDFA HFDETHETMY GRIRKVTSEL GWAENPPSRT RHLVSNVMVR
EAAEPNTFEV SSAFILYRNR LERQVDIFAG ERRDVLRRAD NGLGFKIAKR TILLDQSTLL
ANNLSMFF
|
|---|
| |