| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3536 |
|---|
| Symbol | |
|---|
| ID | 4687489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3755080 |
|---|
| End bp | 3756147 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639836550 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_983754 |
|---|
| Protein GI | 121606425 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.857231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCCGACC CTTCGCCCAC TCTTACCCTG CCCACGCCGC GAAGCAGCCC GCGCTGGAGC
CGCCTGGCTC CCGTGGGCCG GCGCCTGTTC AGCGTGCTGC TGACCCTGCT GGGTTTGCTG
CTGCTGACCT TCGTGATTGG CCGCGTCATG CCGCTCGATC CGGTGCTGTC CATCGTCGGC
CCCGACGCCG ACCGATCCAC GTATGAGCAA GTTTTCAAAC AGCTGGGGCT GGACAAGCCG
CTGCCGGTTC AGTTTGCCTA CTACCTGGGC GACCTGCTGC GCGGTGACCT GGGCAATGCG
CTGCTCACCG GGCACAAGGT GACAGAAGAC ATCGCCCGGG TGTTCCCCGC CACCATGGAG
ATGGCCACCA TGGCCATCAT CTTCGGCACC TGCCTGGGCA TTCCGCTGGG CGTGTATGCC
GCCACCCGGC GCGGCACCGT GGCCGACCAT GTGGTGCGGG TCATCAGCCT GTTCGGCTAT
TCCACGCCGG TGTTCTGGTT CGGCATGATG GGCTTGCTGG TGTTCTACGC CTGGCTGGGC
TGGGCCGGCG GCGCCGGGCG GGTGGACCTG GCCTTTGACG GCATGGTGCC CCCGGCCAGC
GGCTTTTTGC TGTTTGATTC AGCCATGGCC GGTGAATGGG ATGTGTTTCG CAGCGCCATC
AAGCACGTCA CGCTGCCCGC CTGCATCCTG GGCCTGCACT CCATGGCCTA CATCAGCCGC
ATGACCCGCA GTTTCATGCT GGCGCAGCTG TCGCAGGAAT ACGTCCTCAC GGCGCGGGTC
AAGGGCTTGT CCGAGCGCGG CGTGGTCTGG CACCATGCCT TTCGCAACAT CCTGGTCCAG
CTGCTGACGA TTGTGGCGCT GGCGTACGGC AGCCTGCTGG AAGGGGCGGT GCTGATCGAA
ACGGTGTTTG CCTGGCCCGG TTTTGGCCAA TACCTGACCA GCAGCCTGCT GCTGGGCGAC
ATGAATGCCG TGATGGGCTG CGTGCTGGTG GTGGGGGTCA TCTTCATCAC CCTGAACCTG
CTCTCCGACG CCCTGTACCA AGTCTTTGAC CCGAGGACAC GCCGATGA
|
|---|
| Protein sequence | MSDPSPTLTL PTPRSSPRWS RLAPVGRRLF SVLLTLLGLL LLTFVIGRVM PLDPVLSIVG
PDADRSTYEQ VFKQLGLDKP LPVQFAYYLG DLLRGDLGNA LLTGHKVTED IARVFPATME
MATMAIIFGT CLGIPLGVYA ATRRGTVADH VVRVISLFGY STPVFWFGMM GLLVFYAWLG
WAGGAGRVDL AFDGMVPPAS GFLLFDSAMA GEWDVFRSAI KHVTLPACIL GLHSMAYISR
MTRSFMLAQL SQEYVLTARV KGLSERGVVW HHAFRNILVQ LLTIVALAYG SLLEGAVLIE
TVFAWPGFGQ YLTSSLLLGD MNAVMGCVLV VGVIFITLNL LSDALYQVFD PRTRR
|
|---|
| |