| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3460 |
|---|
| Symbol | |
|---|
| ID | 4687125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3670569 |
|---|
| End bp | 3672434 |
|---|
| Gene Length | 1866 bp |
|---|
| Protein Length | 621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639836474 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_983678 |
|---|
| Protein GI | 121606349 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCCC GAGCTTCCAC TGCTGATTCC TATCCCGCGC CGGCCATGAC GGCCCCAGGC
GCCAAGGCAG CGCCCGTGCC GCCGCGTTCC GACTGGGCCA CGCTCAAGCG CCTGTTTCCC
TACCTGTGGG AGTACAAGTG GCGCGCCATG GCGGCGCTGG CCTTCATGCT GGGCGCCAAG
CTGGCCAACG TCGGCGTGCC GCTGCTGCTG AAGGATCTGG TCGATACCAT GAGCTTCAAG
CCCGGCGATG TAAAGGCCGT GCTGGTCGTG CCGGTCGCTT TGCTGCTGGC CTACGGCCTG
CTGCGCCTCT CGACCACGCT GTTCACCGAG CTGCGCGAGC TGGTGTTCGC CAAGGCCACC
GAAGGCGCGG CGCGGCGCAT TTCGCTCGAA GTGTTCCGGC ATCTGCACGC GCTGAGCCTG
CGCTTTCACC TGGAGCGCCA GACCGGCGGC ATGACGCGCG ACATCGAGCG CGGCACGCGC
GGCGTGCATT CGCTGATCTC GTATTCGCTC TACAGCATCA TCCCGACGCT GATCGAGGTG
ACGCTGGTGC TGAGCCTCTT GGCCGTCAAG TTCGATGTCT GGTTCGCCGG CATCACCTTG
ATCGCGCTGG TGTTCTACAT CACCTTCACG GTCACCGTGA CCAACTGGCG CACGCAGTTT
CGCAAGGCCA TGAACGAACT CGATTCGTCG GCGCACAGCC GCGCCATCGA TTCGCTCTTG
AACTACGAAA CCGTCAAGTA TTTCAACAAC GAGGAGTTCG AAGCCCAGCG CTACGACGAG
AACCTCAAGC GCTACCGCGC CGCCGCCATC AAGAGCCAGC GCACGCTGAG CATGCTCAAC
GCCGGGCAGC AGTTGATCAT CGCGCTCGGC CTGGTGGCGA TGCTGTGGCG CGCCACGCAG
GGCGTGGTCG ATGGCCGCAT GACGCTGGGC GACCTGGTGA TGGTCAACGC CTTCATGATC
CAGCTCTACA TTCCGCTGGG CTTTTTGGGC GTGATCTACC GCGAGATCAA GCAGAGCCTG
ACCGACCTGG AAAAGATGTT CACGCTGATG GAGCGCGAGC GCGAGATTGC CGACCAGCCG
GGCGCGCAGC CGCTGCGCAT CGAGGCGACG CCAGCCGTGC GCTTCGAGAA TGTCAGCTTT
GCCTACGACC CGGCGCGGCC GATTCTGCAC AACGTGAGTT TCGAGATTCC GCCGGGCAAG
ACCGTGGCCG TCGTCGGCTC GTCGGGCGCC GGCAAATCGA CGCTGGCCCG GCTGCTCTAC
CGTTTTTACG ACGTGCAGCA GGGCCGCATC ACGATTGCCG GGCAGGACAT CAAGCAGGTC
ACGCAGGCCA GCGTGCGCCA GGCGATTGGC ATCGTGCCGC AGGACACGGT GCTGTTCAAC
GACACGGTCG AATACAACAT CGCCTACGGC AAGCCCGGCG CGACGCACGC AGAGGTCGAG
GAAGCCGCCA GAGCCGCGCG CATCCACGGC TTCATCGCCT CGACGCCGCT GGGCTACAAC
ACCATGGTCG GCGAGCGCGG CCTGAAGCTG TCGGGCGGCG AAAAGCAGCG CGTGGCGATT
GCCCGCACGC TGCTGAAAAA CCCGCCGGTG GTGATCTTCG ACGAAGCCAC CTCGGCGCTC
GATTCGGCCA ACGAGCGCGC CATCCAGGGC GAGCTGCGCA CCGCCGCGCA GAACAAGACC
ACCCTGGTGA TTGCGCACCG GCTTTCGACC GTGGTCGATG CGCACGAGAT CCTGGTGATG
GACGCCGGCC GCATCGTCGA GCGCGGCAGC CATGCCGCGC TTCTGGCCGC CAACGGGCGC
TACGCCGACA TGTGGGCCAT GCAGCAGCAG GCCAGCGATC GGATTCTGGA TGAAATCGGG
GTCTAG
|
|---|
| Protein sequence | MRSRASTADS YPAPAMTAPG AKAAPVPPRS DWATLKRLFP YLWEYKWRAM AALAFMLGAK
LANVGVPLLL KDLVDTMSFK PGDVKAVLVV PVALLLAYGL LRLSTTLFTE LRELVFAKAT
EGAARRISLE VFRHLHALSL RFHLERQTGG MTRDIERGTR GVHSLISYSL YSIIPTLIEV
TLVLSLLAVK FDVWFAGITL IALVFYITFT VTVTNWRTQF RKAMNELDSS AHSRAIDSLL
NYETVKYFNN EEFEAQRYDE NLKRYRAAAI KSQRTLSMLN AGQQLIIALG LVAMLWRATQ
GVVDGRMTLG DLVMVNAFMI QLYIPLGFLG VIYREIKQSL TDLEKMFTLM EREREIADQP
GAQPLRIEAT PAVRFENVSF AYDPARPILH NVSFEIPPGK TVAVVGSSGA GKSTLARLLY
RFYDVQQGRI TIAGQDIKQV TQASVRQAIG IVPQDTVLFN DTVEYNIAYG KPGATHAEVE
EAARAARIHG FIASTPLGYN TMVGERGLKL SGGEKQRVAI ARTLLKNPPV VIFDEATSAL
DSANERAIQG ELRTAAQNKT TLVIAHRLST VVDAHEILVM DAGRIVERGS HAALLAANGR
YADMWAMQQQ ASDRILDEIG V
|
|---|
| |