| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3108 |
|---|
| Symbol | |
|---|
| ID | 4687236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3292192 |
|---|
| End bp | 3293274 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639836121 |
|---|
| Product | transposase IS116/IS110/IS902 family protein |
|---|
| Protein accession | YP_983328 |
|---|
| Protein GI | 121605999 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3547] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.690807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTA CTACCGTTGC CGTCGATCTT GCAAAGTCCG TTTTCCAGCT CGCCGTCGCC
GATGCGTCTT GGCGGGTCGT GGAAACACAC CGCCTTACGC GTACCCAGTT CGAGCGCTGG
TTCGTCAACC GGGATGTGAG TCTGGTCATC ATGGAAGCCT GCGGCTCGGC CCACCACTGG
GCACGCTGGC TCAATGGTCT GGGCATTGAG GTTCGACTAC TCCCAGCCCA GTACGTCCGT
GCCTATGTCA AACGCAACAA GACCGATGCT GCCGATGCAG CGGCGCTGCT CGAAGCCGCC
CGGGCGTCGG ATATTCGCCC GGTACGAATC AAGTCAGTCG AGCAACAGGC ACTGCAAGGC
ATGCACCGCA TCCGCAGCTT GTGGATGGGA ACGCGTACCT CGCGCATCAA TGCCTTGCGT
GGTTTTTGCC GGGAGTTTGG CATTGCGATT CCCGTAGGCG CGCGCACTGG CATCGAAGCC
ATCAGTCGGG TGCTGGCTGA CCCCCATACT GCGGTGCCCG ATCTGATTCG GGGGACAGCC
AAATTGCTGA TTGAAGAAAT ACGCCTGCTC GAAGCTCGCA TTGCTCAACT GGAGCGCGAA
CTGGCATCCC TGGCCAGGCT GTGCCCGGCA TGCACCACGC TGCTCTCGAT ACCAGGCATT
GGCTTGCTCA CGGCCACTGC AATGGTGGCG GCTACATCTG GCGATGTCAG TCACTTCAAG
GACGCACGGC ATTTCTCCAG TTGGTTTGGC TTGACGCCCA AGGAGTACAG CTCGGGCAAT
AGCCGTTACC TGGGGCGCAT TTCCAAGAAG GGAGATCGCT ATCTACGAAT GCTGCTCACT
CACGGGGCCA GAAGTGTGCT GCGTGCCGCC AAGGTGGCTG AGGGTTCCGG CAAAGAAGTT
TGTGGTGTGC GCCGTTGGGC GCTGGATGTG CAGACCAGGG GCAACCACAA CAAGGCGGCT
TGTGCGCTGG CCAACAAGCT GGCGCGGATT TGCTATGCCA CGCTCAGAGA CAAGGAGCCG
TTTGATGAAG GCCAGCGGCT GAACAAGAAG ATCAACAGGG AGAGCTTTGT GATGCCGGCC
TGA
|
|---|
| Protein sequence | MNATTVAVDL AKSVFQLAVA DASWRVVETH RLTRTQFERW FVNRDVSLVI MEACGSAHHW
ARWLNGLGIE VRLLPAQYVR AYVKRNKTDA ADAAALLEAA RASDIRPVRI KSVEQQALQG
MHRIRSLWMG TRTSRINALR GFCREFGIAI PVGARTGIEA ISRVLADPHT AVPDLIRGTA
KLLIEEIRLL EARIAQLERE LASLARLCPA CTTLLSIPGI GLLTATAMVA ATSGDVSHFK
DARHFSSWFG LTPKEYSSGN SRYLGRISKK GDRYLRMLLT HGARSVLRAA KVAEGSGKEV
CGVRRWALDV QTRGNHNKAA CALANKLARI CYATLRDKEP FDEGQRLNKK INRESFVMPA
|
|---|
| |