| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2987 |
|---|
| Symbol | |
|---|
| ID | 4686798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3155152 |
|---|
| End bp | 3155691 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639836000 |
|---|
| Product | OmpA/MotB domain-containing protein |
|---|
| Protein accession | YP_983207 |
|---|
| Protein GI | 121605878 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.221024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.129145 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCTC AGGATGATGA CAGCCAGCAA CGCGTGGCCC TGTTTCTGGT TTTTGGTTTG
ATCGCCATCG TTGTGGCCTC GGTGCTGGTG TTTGGCGTGA AGCATCGCGG CGCTTCGGTC
AAGGCCGCAA GCGCTCCGGC AGCCGTGGCA GCTGGCATGC CGGGCGCGGC AAGCTTGCCC
GCAGCGTCCA GCGATGCGCA GGCGGCTTCG GATGCGGCCA GCGTCAAGGT CGAGCAGGGC
GTTGTCAAGT TCTACTTTGC TTCCGGCAAG GCCGACCTGG CCGCCGGCGC TAGCGAAGCG
CTGACCGACG TGGTCAAGGG CGCGCAGGCG GGCCGCAAGC TGGTGATTTC GGGTTTCCAC
GACGCGACCG GCAATGCGGC GCAAAACGCC GAGCTGGCCA AGCAGCGCGC GCTGGCCGTG
CGTGACGCCC TGACCGCAGC AGGCGTTGCC GAAGGCCAGA TCGAACTCAA AAAGCCCGAG
CAGATCACCG GCAGCGGCCC CAACGCCGAA GCGCGCCGCG TCGAAATCAG CCTTCAATAA
|
|---|
| Protein sequence | MFSQDDDSQQ RVALFLVFGL IAIVVASVLV FGVKHRGASV KAASAPAAVA AGMPGAASLP
AASSDAQAAS DAASVKVEQG VVKFYFASGK ADLAAGASEA LTDVVKGAQA GRKLVISGFH
DATGNAAQNA ELAKQRALAV RDALTAAGVA EGQIELKKPE QITGSGPNAE ARRVEISLQ
|
|---|
| |