| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2915 |
|---|
| Symbol | |
|---|
| ID | 4688738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3070810 |
|---|
| End bp | 3071922 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639835922 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_983135 |
|---|
| Protein GI | 121605806 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0313875 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAACTCT GCGTACCAGA CACAGAAATG ATGCCTCGTG CTGTTGCCCT TGCCCTCGCA
GCCATGCGTA TCACATCACC CAACCCCCGC GTAGGCTGCG TTCTCACCTC CTCTGGGGAT
GTCTTGGGTC AAGGCCACAC GCAAGCGGCT GGTCACCCGC ATGCCGAAAT CATGGCTCTG
CGCGATGCAG CCGCACAAGG CCATTCGGTT GTAGGCGCCA CGGCCTACGT CACCCTCGAA
CCCTGCTCGC ACCACGGCCG CACCGGCCCT TGCTGCGACG CACTCATCGC GGCAGGCATC
AAAAAAATCG TGGCTTCCAT CGCAGACCCC AACCCCCTTG TCTCAGGCCA GGGCTTTGAG
CGCTTGCGCG CAGCCGGCAT TGAAGTCGAA GTCGGCCCCG GCGCTGCCGA ATCACGCGAA
CTCAATATCG GGTTTTTCAG CCGCATGATC CGCAAGACAC CCTGGGTGCG CATGAAAATG
GCGGCGTCGC TGGATGGCAC GACGGCGCTC GCCAATGGCC AGAGCCAGTG GATCACCTCG
GCCGAAGCCC GCGCCGACGG CCATGCCTGG CGCGCGCGCG CCTGCGCCGT GCTGACGGGC
ATCGGCACCG TGCTGCAAGA CAATCCGCGC CTGGATGTGC GGCTGGTCAG CACGCCGCGC
CAGCCGCACC TGATCGTCGT GGACAGCCGG CTGGAGACAC CGCTGGATGC TCATCTTTTC
ATAGCTGGAC GCGCGCTCTA CATCTACGCC GCAGTCCAAA ATGAAGCAAA AAAACAAGCC
CTGGAAGCAA AAGGGGCCAC CGTTATCTAT CTGCCCGATG CCAACGGAAA AGTAGATTTG
ACCGCCATGG TTCAAGACCT GGGCCGCCGC GAAATCAACG AGTTGCATGT CGAAGCCGGC
AGCAAGCTCA ATGGCTCGCT GATCCGCGCC GGGCTGGTCG ATGAATTCCT GCTTTACCTG
GCGCCCAAAC TGCTCGGGCC GGGCCAGGGC ATGGCGTCGT TCGGGCCGTT GCAGGCACTT
TCCGACGCGG TTGAGTTGCA GTTTCAATCC ACCGACAGGG TCGGCGCCGA CTTGCGGATA
GTTGCCCGCG TCGCTGGGCG GGACCAGTTC TAG
|
|---|
| Protein sequence | MELCVPDTEM MPRAVALALA AMRITSPNPR VGCVLTSSGD VLGQGHTQAA GHPHAEIMAL
RDAAAQGHSV VGATAYVTLE PCSHHGRTGP CCDALIAAGI KKIVASIADP NPLVSGQGFE
RLRAAGIEVE VGPGAAESRE LNIGFFSRMI RKTPWVRMKM AASLDGTTAL ANGQSQWITS
AEARADGHAW RARACAVLTG IGTVLQDNPR LDVRLVSTPR QPHLIVVDSR LETPLDAHLF
IAGRALYIYA AVQNEAKKQA LEAKGATVIY LPDANGKVDL TAMVQDLGRR EINELHVEAG
SKLNGSLIRA GLVDEFLLYL APKLLGPGQG MASFGPLQAL SDAVELQFQS TDRVGADLRI
VARVAGRDQF
|
|---|
| |