| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2909 |
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| Symbol | |
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| ID | 4689351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3064116 |
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| End bp | 3064682 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639835916 |
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| Product | pilus assembly protein |
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| Protein accession | YP_983129 |
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| Protein GI | 121605800 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.256003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0433853 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATCGC TTGAGCTATC CCGCAATTCT TTCAACTCCA AGGGTAATGG ATTCACGCTG
ATTGAGGTCA TGGTCAGCCT GGCGATTCTG GGAATTCTGG CTGCATTGGC GGCGCCCAGC
TTTTCCGAGA CGATCAAACG TTACCGAGTC AATGCAATTA AAGATGATTT GATAGCATCT
ATGCAGGCTG CTCGGTCCGA AGCCATTCGC AGAGGTACGT CAATCACTTT GATTCGACTG
CCCGGCTGCG GTGCGGAGGC AAATGACACT GATATTTGGA GTTGCGGTTG GCTGACGGTT
GTGGGCACCA TTCCAGATAC TAGAGACGTA AATACTTCCG AACAAAACAG CGCATTACAA
ATTACGACGG TACCAACTGG TTATGACGTG ATGCATACCG GCAGCGGCAG AAAAGTAATA
TTCAACCGTT GGGGTCAAGC AGGAGTAGGG CAAAAATTTG TGATCACTCA AAGCAATGAT
GGTGTTGCTG GCACAGCAAC CCTGACCCTT TGCATGAGCA GTGGTGGCAG AACACGCAGC
GTGAAAGGTG AGGCAACATG CAACTAA
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| Protein sequence | MKSLELSRNS FNSKGNGFTL IEVMVSLAIL GILAALAAPS FSETIKRYRV NAIKDDLIAS
MQAARSEAIR RGTSITLIRL PGCGAEANDT DIWSCGWLTV VGTIPDTRDV NTSEQNSALQ
ITTVPTGYDV MHTGSGRKVI FNRWGQAGVG QKFVITQSND GVAGTATLTL CMSSGGRTRS
VKGEATCN
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