| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2716 |
|---|
| Symbol | |
|---|
| ID | 4688980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2863377 |
|---|
| End bp | 2864081 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639835724 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_982939 |
|---|
| Protein GI | 121605610 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0337117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.373128 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC TTTTGACTTT GGACAACATC AACGCCTTCT ACGGTTCGGC CCACATCCTG
CACGGCCTGA GCTTGAGCGT GAATGCCGGC GAGCGCGTGG CGCTGATCGG CCGCAACGGC
GTCGGCAAGA CCACGGTGGT CAACACCATT CTCGGGCTGG CCGCGCTCAA GGGCGGGCAG
ATCCACCTGG GCAAGCATGC GCTGCACAAG CCGCGCCCCT ACATGGCCGC CCAGCATGGC
GTGGTGGTCG TGCCGCAGGG CCGGCGCATC GTCGCCAATC TGAGCGTGGA AGAAAACCTG
CAGCTCGGCG CCGCCGTGGG CCGCAAGGGG CACTGGAACG TGCCAGAGAT CTACAAGCTG
TTTCCCATTT TGCAGGAGCG CGCCCACACG CCGGGAACGG CGCTGTCGGG CGGCCAGCAG
CAGATGCTGG CGGTCGGCCG GGCGCTGATG GCCAACCCTT CCTTGATCCT GCTCGACGAG
CCGACCGAAG GCCTGGCCCC GGTGATCGTC GATCAGCTCG CGCGCATCTT CAACCAGGTC
GCCGGCCAGG GAACGGCGCT GCTGCTGATC GAGCAGAACA TGAGCCTGGT GGTGCGCGTG
GCCGAGCGCT ATTGCGCCAT GGCCAAGGGC TCGGTGGTGG CCCAGGGCCG GGTCGAGAAC
ACGCGCGAAA GCCTGAAAGA CCTCGAAACC CATGTGATGG TCTGA
|
|---|
| Protein sequence | MTALLTLDNI NAFYGSAHIL HGLSLSVNAG ERVALIGRNG VGKTTVVNTI LGLAALKGGQ
IHLGKHALHK PRPYMAAQHG VVVVPQGRRI VANLSVEENL QLGAAVGRKG HWNVPEIYKL
FPILQERAHT PGTALSGGQQ QMLAVGRALM ANPSLILLDE PTEGLAPVIV DQLARIFNQV
AGQGTALLLI EQNMSLVVRV AERYCAMAKG SVVAQGRVEN TRESLKDLET HVMV
|
|---|
| |