| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2608 |
|---|
| Symbol | |
|---|
| ID | 4689602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2744275 |
|---|
| End bp | 2745276 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639835615 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_982831 |
|---|
| Protein GI | 121605502 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.654237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT CCACCGCAGC CCTGGCCCTG ACCACTCTGG CTTTTGCCGC TTCCAGCATC
TTTGCCGCCG ATAACGTCGT GATCGGCCTG ATCACCAAGA CCGACACCAA CCCCTTCTTC
GTCAAGATGA AGGAAGGTGC TGAATTGGAA GCCCATAAAC AGCGCGTCAA GGTGATCAGC
GCTGCCGGCA AGACCGACGG GGACAACGCC GGACAGATCA CGGCCATGGA AAACATGGTG
GCGGCCGGGG TCAAGACCAT CTTGATCACG CCCAGCGATG CCAAGGCCAT CATTCCGGCC
ATCAGGAAAG CCCAGGAAAA GGGCGTCATG GTGATTGCCC TGGACAGCCC GACCGACCCG
GTCAGCGCCG TCGATGGCCT GTTTGCCACC GACAACTACA AGGCCGGCGT GCTCATCGGC
CAGTACGCCA AGGCCGCCCT GAATGGCAAG ACGCCAGTCA TTGCAACTCT GGATTTATTC
CCCGGCCACC CGGTGGGCGC CCAGCGCCAC AACGGCTTCC TGCAGGGCTT TGGCCTGCAG
TCGCAGGGTG CCAAGAGCAA CGACCTGGCC AAGCCGGCCG AAGTGGTCTG CATGGCCGAC
AGCTTTGGCG ATGCGGCCAA GGGCCAGACC GGCATGGAAA ACTGCCTGCA GAAAAACCCG
GCCATCAACC TGGTCTACAC CATCAATGAG CCCGCAGCGG CAGGCGCCTA CAAGGCGCTG
AAGGCCGCCG GCAAGGAAAA GGATGTGATG ATCGTCTCGG TGGACGGCGG CTGCGACGGC
ATCCGGGACG TGGGCGCCGG CATCATCGCC GCCACCGCGC AGCAATATCC GCTGAAGATG
GCGTCCTTGG GCGTGATTGC CGGCGTGAAA TATGCCAATT CCGGCCAAAA GGTCAGCGGC
TACACCGATA CCGGCGTGAC TCTGGTCTCG GCCAAGCCGC TGCCCGGCGT GTACAGCCTG
GATGTCAAAA CCGGCACCGC ACTGTGCTGG GGCAAAAGAT AG
|
|---|
| Protein sequence | MKNSTAALAL TTLAFAASSI FAADNVVIGL ITKTDTNPFF VKMKEGAELE AHKQRVKVIS
AAGKTDGDNA GQITAMENMV AAGVKTILIT PSDAKAIIPA IRKAQEKGVM VIALDSPTDP
VSAVDGLFAT DNYKAGVLIG QYAKAALNGK TPVIATLDLF PGHPVGAQRH NGFLQGFGLQ
SQGAKSNDLA KPAEVVCMAD SFGDAAKGQT GMENCLQKNP AINLVYTINE PAAAGAYKAL
KAAGKEKDVM IVSVDGGCDG IRDVGAGIIA ATAQQYPLKM ASLGVIAGVK YANSGQKVSG
YTDTGVTLVS AKPLPGVYSL DVKTGTALCW GKR
|
|---|
| |