| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2123 |
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| Symbol | |
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| ID | 4688314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2260531 |
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| End bp | 2261298 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639835134 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_982353 |
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| Protein GI | 121605024 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
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| TIGRFAM ID | [TIGR03206] 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000297813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0786529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAAC TGAAAAACAA GACGGTCATC GTGACTGGCG GCGGCGGCGG CATTGGCGGC
GCGACCTGCC GTCGTTTTGC CGCTGAAGGC GCCAAGGTCG CCGTGTTCGA CATGAACGTC
GAAGCGGCCC AGCGCGTGGC GGACGAGATC AAGGCCGCTG GCGGCATCGC CCAGGCCTTC
AAGTGCAACA TCACCGACCG CGCCGAAGTC GATGCCGCCG TGGCGGCCGC CGAAGCGGCT
CTTGGCCCCA TCGCTGTCTT GGTGAACAAC GCCGGCTGGG ACGTCTTCAA GCCCTTCGTC
AAAACCGTGC CGGCCGAGTG GGACAAGCTG ATCGCCATCA ACCTGACCGG CGCGCTGCAC
ATGCACCACG CGGTGCTGCC GGGCATGGCC GAGCGCAAAT ACGGCCACAT CGTGAACGTG
GCGTCCGACG CCGCGCGGGG CGGCTCTTCC GGCGAGGCCG TTTACGCCGC CTGCAAGGGC
GGCCTGGTGG CCCTGTCCAA GACCCTGGCG CGTGAACACG CCCGCCAGGG CATCACCGTC
AATGTGGTGT GCCCCGGCCC GACCGACACC GCCCTGCTCG CTGGCGTGGC CGAAGGCGCC
CGCGACCCGG CCAAGCTGAT CGAGGCGTTC AAGAGCGCCA TCCCGCTGGG CCGCCTGGGC
CAGCCCGACG ACCTGGCCAG CGCCATCGTT TTCTTCGGCA GCGACGACGC AGCCTTCATC
ACCGGCCAGG TCATCAGCGT GTCGGGCGGC CTGACCATGC ACGGATGA
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| Protein sequence | MKKLKNKTVI VTGGGGGIGG ATCRRFAAEG AKVAVFDMNV EAAQRVADEI KAAGGIAQAF
KCNITDRAEV DAAVAAAEAA LGPIAVLVNN AGWDVFKPFV KTVPAEWDKL IAINLTGALH
MHHAVLPGMA ERKYGHIVNV ASDAARGGSS GEAVYAACKG GLVALSKTLA REHARQGITV
NVVCPGPTDT ALLAGVAEGA RDPAKLIEAF KSAIPLGRLG QPDDLASAIV FFGSDDAAFI
TGQVISVSGG LTMHG
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