| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2078 |
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| Symbol | |
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| ID | 4689672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2207801 |
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| End bp | 2212558 |
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| Gene Length | 4758 bp |
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| Protein Length | 1585 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639835089 |
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| Product | NAD-glutamate dehydrogenase |
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| Protein accession | YP_982308 |
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| Protein GI | 121604979 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
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| TIGRFAM ID | [TIGR03174] CRISPR-associated protein Csc3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.660991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATGAACA CCACACCGCT TGCCGATCTG CTGGCCTATA CAGCCGAGCA CGCCGGACCC
AGTGCCAAAC GGCTCTCCGC GTTTGTGTCG GCCTACTTTG AAAATGCTGA CCCGGACGAA
ATTCTCGCGC GCGGGCCGGC CCAGCTGTTT GGCATTGCCA GCGCCCATTG GCGTTTGCTC
GACGCGCCCC GCGCCCCCCA GAGCGCCAGG ATCCGGGTGT TCAACCCGAC CCTGGCGGAA
GATGGTTTTG TGAGCGACCA CACCTCGGTC CAGATCGTGC ACGACAACAT GCCATTCCTG
GTCGATTCGG TCACCATGGC CATCAATCGC AGTGGCCGCA CGGCGCACTG GATTGTCCAC
CCCTTGCTGT GCGTGGCCCG CAATGCGCAG GGTCGTCCCG AGACGGTGGA CAGCGTGGCG
GGTGGCAAAG CCACCGGGCG AAGCGACCCG ATCGAGTCGC TCATCATGGT GGAATGTGAT
CGCATTCTGG CTGCTGCAGA GCGGGAAGCG CTGGGCCGTG ACCTGGATCG GGTGCTGGGC
GATGTTCGCG GCGTAGTGCA GGACTGGGAT GCCATGCTCG AGCGGGTTCA AGCCCTGGGG
CTGGCGGTGG CGCGGTCGCC GCTGTCGCAG TCCAGCAAGC AGGAAGGCGT TGAATTCCTG
CACTGGCTGG AAGACCGGCA CTTCACCTTT TTGGGCGCGC GCAACTATGA CATCCAGCGC
GATGGCGACG CCGTCAGCCT GATCGCGCGG CCGGAGTCGG GCCTGGGCAT CCTGCGCGGC
GCCCCGCAGA CTGCAGTGTC GCGCCTGCCA CCCGAGGCCG TGGCCTTGCT TGAATCCGAT
GAACTGGTGC TCATCACCAA GGCCATGACG CGCGCCACCG TGCACCGCCC CGCCTGGCTC
GACTACATCG CCATCAAGCG CTTTGACGAC GCCGGCAAGG TGGTCGGAGA GGCCCGCTTT
CTGGGGCTTT ACACCTCGAC CGCCTATGCC GCCGCAGTGG CCGATATCCC GCAGGTGCGG
CGACGCGTGG CTGACGTGGT GGCTATTGCG GGCGTCGTGC CCAACAGCCA CGCGGCCAAA
TCCCTGCAAT CGATTCTGGA CGTCTATCCG CGCGACGAAC TGTTCCAGAT TGATACCGCC
ACCCTGGCCG ACCATGCCAT TGGCATCCTG CGGCTGCAGG AGCGCCAGCG CACCCGGCTG
TTCCTGCGCC GCGACCCGTT TGACCGCTTC ACCTCGGCCC AGGTCTTTGT GCCCCGCGAC
CGCTACAACA CCGAGCTGCG CGTGAAGATT GGCGCCGAGT TGATGGCGGC CCTCGATGGC
CAGTCGCTCG AATTCACGCC CATGCTGACA GACAGCCCGC TGGCGCGCAT TCACTACCTG
GTGCGCGCCC GTGAGCACGC GCCGGTGAAC GTGGACCTGC GCGCGCTTGA GGCGCGGCTG
GCCCGGCTGG CCCTGCGCTG GGAAGACGAG TTCACCAGCG AGCTGCTGCG CGCGCACGGC
GAAGGCCCGG GGCTGGCGCT GGCGCACCGC TTTGCCACAG CGCTCCCCAC GGCCTACCGC
GAGGATTTTT CGGCGGCGGT CGCCGCCGAA GACGCCGAAA TGCTGGCCGG CCTGAGCGCC
GCCTCGCCGC TGGCGGTCAA GCTGTACCGT CCGCTGGATG CCGGCGAAGG GCTGCTGCGC
TTGAAGATCT ACAACACGTC CAAAGTCCCG CTGTCGGACT CGCTGCCGGT GCTCGAACGC
ATGGGGGCCC GGGTGCTTGA CGAGCATCCC TATCGAATCG GCAGCGACGC GCTGTGGGTT
CACGACCTGG GCCTGCAACT GCCGGCCAGC ACCGATTTGG CCACCGTCAA GGTCCGGTTT
GAGGCCCTGT TTGCGCAGGT CTGGCGCGGC GATGTGGAAA GCGACGACCT GAACCGGCTG
GTTCTGAGCA CCGCGCTCGA CGCACGCGCC ATTACCGTGC TGCGCGCCTA CACGCGCTAC
TTCAAGCAAC TGGGTTTTAG CTTCAGCCAA AGCTACATAG AGGCCGCGCT GAACAACAAC
GCGGGCATTG CCGGGGAACT TGCCAGACTG TTCAATGCCC GCTTCGACCC GGCCCTGCCC
GGCAACCGGG ACGAGGCCCA AAAGCAGCTG ACGACGCAGA TCGAGGCCCA TCTGGAGGCA
GTGGCCAGCC TGGACGAAGA CCGCATCCTG CGGCAGTTTT TCCTCACGAT AGGCGCTACC
CTGCGAACCA ACGCCTGGCA ACTCACCGCC AGCGGCGAAA GCAAGCCCTA CCTGTCGTTC
AAGCTCAACC CGCGCGAAGT CCCTGGAGTG CCCGAGCCCA AGCCGCTGTT TGAAATCTGG
GTCTATTCAC CGCGTGTAGA AGGTGTGCAT CTGCGCCGCG GCAAGGTGGC GCGCGGTGGC
CTGCGCTGGT CTGACCGCCG GGAGGACTTC CGCACTGAAG TGCTGGGCCT GGTGAAAGCC
CAGCAGGTCA AGAACACCGT GATCGTGCCG GTCGGCTCCA AAGGCGGCTT CGTGCTGAAG
AACGCCCCGC CCGCCAGTGA CCGCGAAGCC TGGATGGCCG AGGGCGTGGC CTGCTACAGG
CTCTTCCTCT CGGGCCTGCT GGACGTGACC GACAACGTGG TCAAGAGTGC GGTGGTGCCA
CCGGCCAACG TGGTCCGGCA TGACCCGGAC GACCCCTACC TGGTGGTGGC GGCCGACAAG
GGAACGGCCA CGTTCTCCGA CATTGCCAAC AGCGTGTCGG CCGACTACGG CTTCTGGCTG
GGGGACGCTT TTGCCTCGGG CGGCTCGGTC GGCTACGACC ACAAGAAAAT GGGCATCACG
GCGCGCGGCG CCTGGGAATC GGTCAAGCGC CACTTCCGCG CCTTGTCGGT CAACACCCAG
ACCACGCCGT TCACCGTGGC GGGCATCGGC GACATGTCGG GTGACGTGTT CGGCAACGGC
ATGCTGCTGT CCGAGCAGAT CCGGCTGGTG GCGGCTTTCG ATCACCGCCA TATCTTCATC
GACCCCACGC CTGATACGGC GCGCTCCTTT GCCGAACGGC AACGCCTGTT CGTGCTGCCC
CGGTCAAGCT GGGACGACTA CGACAAGAGC CTGATTTCCG CCGGCGGCGG GGTCTATCCG
CGCTCGGCCA AGGCTATCAG CCTGAGCCCC GAGGCGCGCG CGGCGCTCGG CATCGAGGCC
GCCGATCTGA CCCCGGCCGA GCTGCTGCGG GCCATTTTGC TGGCGCCTGT GGACCTGCTC
TACAACGGCG GCATCGGCAC CTATGTCAAA GCCAGTTTCG AGAGCCACGC CCAGGTAGGC
GACAAGGCCG GCGACGCGTT TCGCGTCAAC GGCGGCGAGC TGCGCTGCAA GGTGCTGGCT
GAGGGCGGCA ACCTGGGTTG CACGCAAAAC GGCCGCATTG AATACGCCCA AAAAGGCGGC
TTGATCTACA CCGACGCCAT CGACAACTCA GCCGGCGTGG ACTGCTCCGA CCACGAGGTG
AACATCAAGA TCCTGCTGGG CAGCGTAGTG GAAGCGGGTG ATTTGACGCT GAAGCAGCGC
AACGACCTGC TGGCCTCGAT GACGGACGAG GTTGGCCTGC TGGTGCTGAC CGACAACTAC
TACCAGACCC AGGCGCTCGA GATCGCCAGC CACCGCCCCC TGTACCTGCT GGACGGGCAG
CAGCGCCTGA TGCAATGGCT GGAGCGCAAC GGCCGCCTGG ACCGCGCCGT CGAATTCCTG
CCTACGGATA AAGACATCGC GCAGCGCAAG GCCCAGAAAA CCGGACTCAC GGCGCCCGAA
GGCGCGGTGG TGCTGGCCTA CGCCAAGATG TCAGTGTTCG ACGGGCTGAT GGACAGCAAC
CTGCCGGACG ACCCGTACTA CAGCCGGGCG CTCAAGGCCT ACTTCCCCAA GGTCCTGACC
GAAAAATTCG GCGCGGCCAT CGCCAGCCAC CCGCTCAGGC GCGAGATCAT CGCCACCTTC
ATCACCAACA CGGTGGTGAA TCGCACCGGG GCCACCTTCG TCAACTTCAT CGCGTCCGAA
GCGGCCGCAA CGGTGGCCGA CGTGATTCGC GCCTTCACGC TGGCGCGCGA AATCTTCGAC
CTGGAACCGC TGTGGGACCA GATTGACGCG CTGGACTACC GGGTGGAGGC CATCCTGCAG
CTCGACCTGC TGACCCAATT GATCGCCATC GCCCAGCGGG CGTCGCGCTG GATGCTGCGC
GTGCGCACCC AAAGCACCGA CCTGCCGACA CTGATCGAGC GCTACCAGCC GGCGGCGCGC
GAGTTGCGCG CCCACCTCGC GGACTGGCTG CCGCCCTCCG CCCACGCCAG CTGGGAGCAG
GCCACGCTGA GCCTCGTGCA AGTCGGCGTG GAGTCGGCGC TGGCGCAAAA CCTGACTGCG
CTGGAGTTCA TCTTCCCGGC GCTCGATCTG GTCGATCTGG CGCAAAACGC CAGTACCGGG
CTGGAACAGG CGGCGCGCGC CTACTTTGGC GTCGAGGCCG AACTCGGCCT GACGCTCTGG
CGCGCGGAGA TCAAGCGCCT GCCCACCGAC ACGCTGTGGC AAACCCAGGC CCGCGGCAGC
GCGCGCGACG ACGTCTATTC GATCGCCAGC CAGATCACCC AGGGCCTGTT GTCGCGCGGC
GAAGATCTGG CGGGCTGGCG CGACCGGAAT GCGCCGGCGA TTGAACGCCT GTGCAAGCTG
CTGGCCAGCA TCAGCACCCA GGGCGCCGAC CTGGCACCGG TTTCGGTGGC GCTGCGCGAG
TTGCGGCATC TGGCCTGA
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| Protein sequence | MMNTTPLADL LAYTAEHAGP SAKRLSAFVS AYFENADPDE ILARGPAQLF GIASAHWRLL
DAPRAPQSAR IRVFNPTLAE DGFVSDHTSV QIVHDNMPFL VDSVTMAINR SGRTAHWIVH
PLLCVARNAQ GRPETVDSVA GGKATGRSDP IESLIMVECD RILAAAEREA LGRDLDRVLG
DVRGVVQDWD AMLERVQALG LAVARSPLSQ SSKQEGVEFL HWLEDRHFTF LGARNYDIQR
DGDAVSLIAR PESGLGILRG APQTAVSRLP PEAVALLESD ELVLITKAMT RATVHRPAWL
DYIAIKRFDD AGKVVGEARF LGLYTSTAYA AAVADIPQVR RRVADVVAIA GVVPNSHAAK
SLQSILDVYP RDELFQIDTA TLADHAIGIL RLQERQRTRL FLRRDPFDRF TSAQVFVPRD
RYNTELRVKI GAELMAALDG QSLEFTPMLT DSPLARIHYL VRAREHAPVN VDLRALEARL
ARLALRWEDE FTSELLRAHG EGPGLALAHR FATALPTAYR EDFSAAVAAE DAEMLAGLSA
ASPLAVKLYR PLDAGEGLLR LKIYNTSKVP LSDSLPVLER MGARVLDEHP YRIGSDALWV
HDLGLQLPAS TDLATVKVRF EALFAQVWRG DVESDDLNRL VLSTALDARA ITVLRAYTRY
FKQLGFSFSQ SYIEAALNNN AGIAGELARL FNARFDPALP GNRDEAQKQL TTQIEAHLEA
VASLDEDRIL RQFFLTIGAT LRTNAWQLTA SGESKPYLSF KLNPREVPGV PEPKPLFEIW
VYSPRVEGVH LRRGKVARGG LRWSDRREDF RTEVLGLVKA QQVKNTVIVP VGSKGGFVLK
NAPPASDREA WMAEGVACYR LFLSGLLDVT DNVVKSAVVP PANVVRHDPD DPYLVVAADK
GTATFSDIAN SVSADYGFWL GDAFASGGSV GYDHKKMGIT ARGAWESVKR HFRALSVNTQ
TTPFTVAGIG DMSGDVFGNG MLLSEQIRLV AAFDHRHIFI DPTPDTARSF AERQRLFVLP
RSSWDDYDKS LISAGGGVYP RSAKAISLSP EARAALGIEA ADLTPAELLR AILLAPVDLL
YNGGIGTYVK ASFESHAQVG DKAGDAFRVN GGELRCKVLA EGGNLGCTQN GRIEYAQKGG
LIYTDAIDNS AGVDCSDHEV NIKILLGSVV EAGDLTLKQR NDLLASMTDE VGLLVLTDNY
YQTQALEIAS HRPLYLLDGQ QRLMQWLERN GRLDRAVEFL PTDKDIAQRK AQKTGLTAPE
GAVVLAYAKM SVFDGLMDSN LPDDPYYSRA LKAYFPKVLT EKFGAAIASH PLRREIIATF
ITNTVVNRTG ATFVNFIASE AAATVADVIR AFTLAREIFD LEPLWDQIDA LDYRVEAILQ
LDLLTQLIAI AQRASRWMLR VRTQSTDLPT LIERYQPAAR ELRAHLADWL PPSAHASWEQ
ATLSLVQVGV ESALAQNLTA LEFIFPALDL VDLAQNASTG LEQAARAYFG VEAELGLTLW
RAEIKRLPTD TLWQTQARGS ARDDVYSIAS QITQGLLSRG EDLAGWRDRN APAIERLCKL
LASISTQGAD LAPVSVALRE LRHLA
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