| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1942 |
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| Symbol | |
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| ID | 4686173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2063159 |
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| End bp | 2065495 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639834951 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_982173 |
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| Protein GI | 121604844 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0410513 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAA TCATTCGCCA GATCGCCACC GAAATCAGGG TTCATGAACA CCAGATCAAG
ACCGCCGTGG AGCTGCTCGA TGGCGGGGCC ACGGTGCCCT TCATTGCGCG CTACCGCAAG
GAAGCCACCG GCGGGCTGGA CGACATCCAG CTGCGCGAAC TCGAGCAGCG GCTGTCTTAT
CTGCGCGAAC TGGAAAGCCG CCGCGAAACG GTGCTCAAGA GCATCGATGA GCAGGGCAAG
CTGACGCCCG AATTGCGCGC GGCCATTGAA TTCGCCGCCA CCAAGCAGGA TCTCGAAGAC
CTGTACCTGC CCTACAAGCC AAAACGCCGC ACCAAGGGCC AGATCGCCCG CGAATCGGGC
ATCGAGCCGC TGGCTAACCG GCTGTTTGCC GACTCATCCT TGAACCCTGC TGAAGAAGCC
GCTGCCTACG TGAAGGCCGA AAAGAACGAA AGCGGCGACG ATTTCACCAC CGTGCAGGCG
GTGCTCGACG GCGTGCGCGA CATCCTCAGC GAGCGCTGGG CCGAGGACGC GCCGCTGGTG
CAGTCGCTGC GCCAGTGGCT CTGGAGCGAG GGCCTGCTGT CGTCCAAACT GGTCGCCGGC
AAGGACGAGA ACCATGCCGA CAACGCCAAG TTCCGCGATT ATTTCGACTA CGACGAGCCG
ATGGGCCGCG TGCCGTCGCA CCGCGCGCTG GCCGTGTTCC GGGGCCGGGG GCTGGAAATC
CTGGACGCCA AGCTGGTGCT GCCCGAGCCG CCCGAGGCCG GCAAGCCCAG CATCGCCGAG
GGCAAGATTG CGCTGCACTT GGGCTGGAGC CACAAGGCGC GGCCGGCCGA CGATTTGATC
CGCAAGTGCA TCGCCTGGAC CTGGCGCGTC AAGCTCAGCC TGTCGCTGGA GCGCGACCTG
TTCACCCGCT TGCGTGAGGA CGCCGAAAAA GTCGCCATCA AGGTGTTTGC CGACAACCTG
CGCGACCTGC TGCTGGCCGC GCCGGCCGGC CCGCGCGTGG TGATGGGGCT GGACCCCGGC
ATTCGCACCG GCGTGAAGGT GGCCGTGGTC GATACGACGG GCAAGCTGGT CGAAACCGCT
ACGGTGTTTC CGCACGAGCC GCGCAAGGAC TGGGACGGCT CGCTGCACAC GCTCGCCAAG
CTGTGCGAAA AGCACGGCGT GAACCTGATC GCGATTGGCA ACGGCACGGC CAGCCGCGAA
ACCGACAAGC TGGCCGCCGA CCTGATGAAG CGTATCGACG GCATGCAGCG CGTGGTGGTC
AGCGAAGCCG GTGCCTCGGT CTATTCGGCC AGCGAATTCG CCAGCCAGGA AATGCCCGAT
GTCGATGTGA GCCTGCGCGG CGCCGCCAGC ATCGCGCGCC GCCTGCAGGA TCCGCTGGCC
GAGCTGGTCA AGATCGACCC GAAATCGATT GGCGTCGGCC AGTACCAGCA CGACGTGAAC
CAGAGCGACC TGGCGCGCAG CCTGAGCGCG GTGGTCGAGG ACTGCGTGAA CAGCGTCGGC
GTGGACCTGA ACACCGCCAG CGTGCCGCTG CTGGCGCGCG TGTCGGGGCT GAGCCAGACG
GTGGCCAAGT CGGTGGTGCG CTGGCGCGAT GCGAACGGCG CGTTCGGCAG CCGCGCTGAT
TTGCTCAAGG TCACGGGGCT GGGCGCCAAG ACCTTCGAGC AAAGCGCGGG CTTTTTGCGC
CTGCGCGGGG GCACCAATCC GCTGGACATG ACCGGCGTGC ATCCCGAGAC CTATGCGGTC
GTTGAAAAGA TCATGGCGCA CACCGGCCGG CCGGTGGCCG AGCTGATGGG CCGCGCCGAG
ATGCTCAAGA CGCTCAAGCC CGAGCTGTTC GCCAACGAGA AGTTCGGCGT CATCACGGTC
AAAGACATCC TGGCCGAGCT GGAAAAGCCG GCCCGCGACC CGCGCCCCGA CTTCAAGGTG
GCGCGCTTCA ATGACGGCGT GGAAGACATC CGCGACTTGA AGGAAGGCAT GCTGCTCGAA
GGCACGGTCA GCAACGTGGC GGCCTTCGGC GCGTTCATCG ACATTGGCGT GCACCAGGAC
GGCCTGGTGC ATGTCAGCCA GCTGTCCAAC AAGTTCGTGA CCGACGCGCG CGAGGTTGTG
AAAACCGGCG ACATCGTCAA GGTGCGCGTG ACCGAGGTCG ATGTGGCCCG CAAGCGCATC
GGCCTGACCA TGAAGCTGGA CGCTGCGCCA GCGCGCCGTG ACGCCCCGCG CGACAACCGC
TTTGAAGGCG CCCGGCCCGG CACGCAAAAC CGTGGCGGAG CGCGGCAGGG CGCGCCGCAG
CCGGCATCAA CTGCGATGGA ATCGGCGTTC AGCAAGCTGG CGGGACTGAA GAAATAG
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| Protein sequence | MQKIIRQIAT EIRVHEHQIK TAVELLDGGA TVPFIARYRK EATGGLDDIQ LRELEQRLSY
LRELESRRET VLKSIDEQGK LTPELRAAIE FAATKQDLED LYLPYKPKRR TKGQIARESG
IEPLANRLFA DSSLNPAEEA AAYVKAEKNE SGDDFTTVQA VLDGVRDILS ERWAEDAPLV
QSLRQWLWSE GLLSSKLVAG KDENHADNAK FRDYFDYDEP MGRVPSHRAL AVFRGRGLEI
LDAKLVLPEP PEAGKPSIAE GKIALHLGWS HKARPADDLI RKCIAWTWRV KLSLSLERDL
FTRLREDAEK VAIKVFADNL RDLLLAAPAG PRVVMGLDPG IRTGVKVAVV DTTGKLVETA
TVFPHEPRKD WDGSLHTLAK LCEKHGVNLI AIGNGTASRE TDKLAADLMK RIDGMQRVVV
SEAGASVYSA SEFASQEMPD VDVSLRGAAS IARRLQDPLA ELVKIDPKSI GVGQYQHDVN
QSDLARSLSA VVEDCVNSVG VDLNTASVPL LARVSGLSQT VAKSVVRWRD ANGAFGSRAD
LLKVTGLGAK TFEQSAGFLR LRGGTNPLDM TGVHPETYAV VEKIMAHTGR PVAELMGRAE
MLKTLKPELF ANEKFGVITV KDILAELEKP ARDPRPDFKV ARFNDGVEDI RDLKEGMLLE
GTVSNVAAFG AFIDIGVHQD GLVHVSQLSN KFVTDAREVV KTGDIVKVRV TEVDVARKRI
GLTMKLDAAP ARRDAPRDNR FEGARPGTQN RGGARQGAPQ PASTAMESAF SKLAGLKK
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