Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1561 |
Symbol | |
ID | 4689507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1648918 |
End bp | 1649751 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639834564 |
Product | shikimate dehydrogenase |
Protein accession | YP_981796 |
Protein GI | 121604467 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0353213 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAACG GAAACACTGA AATCATTGCC CACATCGGCT TCCCCACCCA CGCCTTCAAG GCGCCGATGA TTTACAACCC CTGGTTTGAA AAAGCCGGGG TCAATGCCAT CGTCGTTCCC ATGGGCTGCC AGGCGCAGGA CTACCCGGAT TTTTTGCGCG CCGTGTTCAA GCTCGCCAAC ATCCGGGGCG CGCTCATCAC CATGCCGCAC AAGGTCACCA CCGTCGGCTT GCTGGACGAG GTGTTTCCCA CGGCTGCGAT TGCCGGTTCG TGCAATGCCG TGCGCCGCAC CGCCGACGGC CGACTGCAGG GCGACATGTT CGACGGCGAA GGCTTTGTGC GCGGCGTGCT GCGCAAGGGC CTGACGCTCA AGGGCGCCCG GGCGCTGGTG GTGGGCAGCG GCGGCGTGGG CTCGGCCATT GCGGCGTCGC TGGCTGCGGC CGGCGTGGCG GCACTGAGCC TGTTTGATGT TCACGGGCCT TCCGCGCAGG GCTTGGGCGA GCGTCTGCGC CAGCACTATC CGGCGCTTGA CGTCGTCACC GGCTCCAACG ACCCCGCAGG CTTTGACCTG GTGGTCAATG CCACGCCCAT GGGGATGAAC GAAGGCGACG CGATGCCGAT GGACGTGTCG CGCATCGACT CCGCTACCTT TGTGGGCGAA GTGGTGATGA AAACCGAGAT GACTGCTTTT CTGGGGGCTG CGCAGGCGCG CGGCTGCCAG GTGCAGGTGG GCTCGGACAT GCTGTTTGAG CAAATCCCCG CGTATCTGGA GTTTTTTGGA TTCCCCAGCA CCACACCCAA CGTGCTGCGC TCCATTGCCC GGCTGAGCTA TTAA
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Protein sequence | MINGNTEIIA HIGFPTHAFK APMIYNPWFE KAGVNAIVVP MGCQAQDYPD FLRAVFKLAN IRGALITMPH KVTTVGLLDE VFPTAAIAGS CNAVRRTADG RLQGDMFDGE GFVRGVLRKG LTLKGARALV VGSGGVGSAI AASLAAAGVA ALSLFDVHGP SAQGLGERLR QHYPALDVVT GSNDPAGFDL VVNATPMGMN EGDAMPMDVS RIDSATFVGE VVMKTEMTAF LGAAQARGCQ VQVGSDMLFE QIPAYLEFFG FPSTTPNVLR SIARLSY
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