| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1299 |
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| Symbol | |
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| ID | 4686477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1387583 |
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| End bp | 1390828 |
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| Gene Length | 3246 bp |
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| Protein Length | 1081 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639834302 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_981535 |
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| Protein GI | 121604206 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.18747 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTCT CCAAATTTTT CATCGACCGG CCGATCTTTG CCAGCGTGCT GTCGCTGCTC
ATGCTGATCT CGGGCCTGAT CGCGCTGCGC AGCCTGCCGA TTTCGGAATA CCCCGAAGTC
GCGCCGCCGT CCGTCGTGGT GCGTGCCCAG TACCCCGGCG CGAACCCGAA GGTGATTGCC
GAAACCGTCT CCACGCCGCT GGAGGAATCG ATCAACGGCG TGGACGGCAT GCTCTACATG
GGCAGCCAGG CCACCACCGA CGGCGTCATG ACGTTGACCG TGACCTTCAA GCTCGGCACC
GACCCCGACA AGGCGCAGCA GCTGGTGCAA AACCGCGTCT CGCAAGCCGA GCCGCGCCTG
CCCGAGGAAG TGCGGCGCCT GGGCGTGACC ACCGTCAAGA GCGCGCCCGA CCTGACCATG
GTCGTGCACC TGGTGTCGCC GAACGACCGC TACGACATGA CCTACCTGCG CAATTACGCG
GTGCTCAATG TCAAGGACCG GCTGGCGCGC ATCCAGGGCG TGGGCCAGGT GCAGATTTTC
GGCGGCGGCG ACTATTCGAT GCGCGTCTGG CTCGACCCGC AGAAGGTCGC GCAGCGCGGC
CTGTCCGCCA GCGACGTGGT CGCGGCGATT CGCGGCCAGA ACGTGCAGGC GGCGGCCGGC
GTGGTCGGCG CTTCGCCGGG ACTGGCGGGC GTGGACATGC AGCTGTCCAT TAACGCGCAG
GGCCGTTTGC AGAGTGAAGA GGAATTCGGC GACATCATCG TCAAGACCGG CGCAGACGGC
GCCATCACCC GGCTGCGCGA CATCGGCCGG TTAGAGCTCG GCTCGGCCGA TTATTCGCTG
CGCTCGCTGC TCAACAACAA GGCCGCCGTC GGCATGGGCG TGTTCCAGGC GCCGGGCTCC
AACGCGCTCG ACATCTCGGC GCAGGTGCGC AGCACCATGG ACGAGATTGC CAAAAACATG
CCCGAGGGCG TGGAATACCG CATCGCCTAC GACCCGACGC AGTTCGTTCG CGCATCGATT
GAATCGGTGG TCCACACGCT GCTCGAAGCC GTCGCCCTGG TGGTGCTGGT GGTGATCCTG
TTCCTGCAGA CCTGGCGCGC GTCCATCATT CCGCTGCTGG CCGTGCCGGT GTCGGTGGTC
GGCACCTTTG CCGTGCTGCA CCTGCTGGGC TTTTCGATCA ATGCGCTGAG CCTGTTCGGG
CTGGTGCTGG CCATCGGCAT CGTCGTTGAT GACGCCATCG TGGTGGTCGA GAACGTCGAG
CGCAACATCG AGGCCGGATT GAGTCCGCGC GACGCCACCT ACCGCGCCAT GCGCGAGGTG
TCGGGGCCGA TCATCGCGAT TGCGCTGGTG CTGGTCGCCG TGTTCGTGCC GCTGGCCTTC
ATCAGCGGCC TGACCGGCCA GTTCTACAAG CAGTTCGCCG TCACCATCGC GATTTCGACC
GTGATCTCGG CCATCAACTC GCTGACGCTG TCCCCGGCGC TGGCCGCCTT GCTGCTCAAG
GGCCACGACC AGCCCAAGGA TGCGCTAACG CGCGGCATGG ACAAGGCATT CGGCTGGCTG
TTTCGCGGCT TCAACCGGAT GTTCCATCGC GGCTCGGAAG CCTACAGCGG CGGCGTCAAG
CGCGTCATCG GCCGCAAGAC GCTGATGCTG GCGGTCTACC TGGCGCTGGT CGGCGTGACC
TTTGGCCTCT TCAAGTCGGT GCCCAGCGGC TTCGTTCCCG CGCAGGACAA GCAGTACCTG
ATCGGCTTTG CGCAGCTGCC CGACGGCGCG ACGCTGGACC GCACCGAAGA CGTGATCCAG
CGCATGGGCG AGATCATGAA GAAGAACCCG AATGTCGAGG ACGCGCTGGC TTTTCCCGGC
CTGTCGATCA ACGGCTTCAC CAACAGCTCG AACTCGGGCA TCGTGTTTGC CACGCTCAAG
CCTTTCGACG AACGCAAGGG CGCCGGCCAG AGCGGCGGCG CCGTGGCCGG CCAGCTGAAC
CAGGCCTTCG GCGGCATCCA GGATGCCTTC ATCGTGATGT TCCCGCCGCC GCCGGTTGCG
GGCCTGGGCA CTACCGGCGG CTTCAAGCTG CAGCTCGAAG ACCGGGGCTC GGTCGGCTAC
GAGGGCATGG ACGCGGCCGT CAAGGCCTTC ATGGCCAAGG CCTACCAAAC GCCCGAACTG
GCCGGCATGT TCACCAGCTG GCAGGTCAAC GTGCCGCAGC TGTTCGCCGA CATCGACCGC
ACCAAGGCGC GCCAGCTCGG CGTGCCGGTC ACCGACATCT TCGACACCAT GCAGATCTAC
CTCGGCAGCC TGTACGCCAA CGACTTCAAC AAGTTCGGCC GCACCTACAG CGTGCGCGTG
CAGGCCGATG CGCCTTACCG CGCGCGGGCC GAGGACGTGG GTTTGCTCAA GGTGCGCTCG
ACCAGCGGCG AGATGGTGCC GCTGTCGGCG CTGATGAAGG TCAGTTCCAG CTTCGGCCCG
GAACGCGCCA TGCGCTACAA CGGCTACCTG TCGGCCGACA TCAACGGCGG CCCGGCGCCC
GGCTATTCGT CGGGCCAGGC GCAGGATGCG ATCAAGCGCA TCGCCGGCGA AACGCTGCCC
AAGGGCGTGA GCTATGAGTG GACCGAGCTG ACCTACCAGG AAATCCTGGC CGGCAACTCG
GCCATGCTGG TGTTTCCGCT GGCGCTGCTG CTGGTGTTTT TGGTGCTGGC CGCGCAGTAC
GAAAGCCTGA CGCTGCCGAT TGCCATTGTC CTGATCGTGC CCATGGGCCT GTTTGCCGCC
ATGCTGGGCG TCAAGCTGAC AGGCGGCGAC AACAACATCT TCACCCAGAT CGGGCTGATC
GTGCTGGTCG GGCTGTCGGC GAAGAACGCG ATTTTGATCG TCGAGTTCGC GCGGGAGCTG
GAGTTCGCCG GGCGCACGCC GGTTCAGGCG GCGATCGAGG CCAGCCGGCT GCGTTTGCGC
CCGATTCTGA TGACCTCGCT GGCCTTCATC ATGGGCGTGC TGCCGCTGGT GCTGTCCACC
GGCGCCGGGG CTGAGATGCG CCAGGCGATG GGCATCGCGG TGTTCTCCGG AATGATCGGC
GTGACCGCCT TCGGCCTGTT CCTGACGCCG GTGTTCTACG TGTTGCTGCG CCGCCTGGCC
GGCAACCGGC CGCTCAAGCT GCATGGCGAG GTGCCGCACC TTGAAGGGTT TGTCAGCGGT
GGCCATCCGG CCGGCGGCGC GGCGCTGCAT GCGCAACCCG CTGCGGCACT GAAGCTGCAC
GAATAA
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| Protein sequence | MNLSKFFIDR PIFASVLSLL MLISGLIALR SLPISEYPEV APPSVVVRAQ YPGANPKVIA
ETVSTPLEES INGVDGMLYM GSQATTDGVM TLTVTFKLGT DPDKAQQLVQ NRVSQAEPRL
PEEVRRLGVT TVKSAPDLTM VVHLVSPNDR YDMTYLRNYA VLNVKDRLAR IQGVGQVQIF
GGGDYSMRVW LDPQKVAQRG LSASDVVAAI RGQNVQAAAG VVGASPGLAG VDMQLSINAQ
GRLQSEEEFG DIIVKTGADG AITRLRDIGR LELGSADYSL RSLLNNKAAV GMGVFQAPGS
NALDISAQVR STMDEIAKNM PEGVEYRIAY DPTQFVRASI ESVVHTLLEA VALVVLVVIL
FLQTWRASII PLLAVPVSVV GTFAVLHLLG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIEAGLSPR DATYRAMREV SGPIIAIALV LVAVFVPLAF ISGLTGQFYK QFAVTIAIST
VISAINSLTL SPALAALLLK GHDQPKDALT RGMDKAFGWL FRGFNRMFHR GSEAYSGGVK
RVIGRKTLML AVYLALVGVT FGLFKSVPSG FVPAQDKQYL IGFAQLPDGA TLDRTEDVIQ
RMGEIMKKNP NVEDALAFPG LSINGFTNSS NSGIVFATLK PFDERKGAGQ SGGAVAGQLN
QAFGGIQDAF IVMFPPPPVA GLGTTGGFKL QLEDRGSVGY EGMDAAVKAF MAKAYQTPEL
AGMFTSWQVN VPQLFADIDR TKARQLGVPV TDIFDTMQIY LGSLYANDFN KFGRTYSVRV
QADAPYRARA EDVGLLKVRS TSGEMVPLSA LMKVSSSFGP ERAMRYNGYL SADINGGPAP
GYSSGQAQDA IKRIAGETLP KGVSYEWTEL TYQEILAGNS AMLVFPLALL LVFLVLAAQY
ESLTLPIAIV LIVPMGLFAA MLGVKLTGGD NNIFTQIGLI VLVGLSAKNA ILIVEFAREL
EFAGRTPVQA AIEASRLRLR PILMTSLAFI MGVLPLVLST GAGAEMRQAM GIAVFSGMIG
VTAFGLFLTP VFYVLLRRLA GNRPLKLHGE VPHLEGFVSG GHPAGGAALH AQPAAALKLH
E
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