| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0766 |
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| Symbol | |
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| ID | 4687119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 808992 |
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| End bp | 810728 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639833762 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_981006 |
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| Protein GI | 121603677 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.59759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.16115 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCCA CTGATACCGC AATAAAACCC CCAGTTTCCA TGGCATTGCC TGGCTTGGGC
CGGGCCTTGA TCGCTGCCGG CAAGCTGGGC CAAAAGGCGG CCGAGGAAAT TTTTCTCAAG
GCGCAAGCCA GTCGAACCAG TTTCATTGCC GAGCTGACAG GCTCAGGGGC GGTGTCGGCA
TTCGATCTGG CGCACCTCAT GTCAACGTCC TTCGCCGCGC CCCTTGTGGA CATGGATGCC
ATCGACAACC AGCGTTTGCC CAAGGGCCTG CTCGACAGCA AGATATGCCT GACCTGCCGC
ATTGTTGTAC TGGGCAAGCG CAACAACCGA CTGATCGTCG CAACCGCTGA TCCATCGGAT
CAGGGTGCTG CGGAAAAAAT CAAGTTTTCT ACCCAGCTGG GCGTGGACTG GGTCATTGCC
GAATACGACA AGCTGTCCCG GCTGGTGGAT GTTTCCAACG CCTCGGCTGC CGAAGCGATT
GAAAACATCG TGGGCTCGGA TTTCGAATTT GATGAGGAGA TGGCGGATTC GCCCGGTGTA
GAAAACACTG AAGCCAGCGT GTCGGAAGTT GAAGACGCGC CGGTTGTCAA GTTCCTGCAG
AAAATGCTGA TAGACGCTTT CAACATGCGT GCTTCCGATC TGCACTTTGA ACCTTTCGAG
CATTCCTACC GGGTCCGGTT TCGGGTCGAT GGGGAGTTGC GTGAAATTTC TTCTCCGCCG
GTCGCCATCA AGGAAAAGCT GGCAGCGCGC ATCAAGGTGA TTTCCAAGCT GGACATTTCC
GAGAAACGGG TGCCGCAGGA CGGCAAGATG AAGCTCAAGA TTGGTCCTGA CCGGGTGATC
GACTTCCGGG TCAGTACCCT GCCGACCATG TTTGGCGAAA AAATCGTGAT TCGTATCCTG
GATCCGAGCA GCGCCAAACT GGGGATTGAT GCGCTGGGTT ATGAGCCGGC TGAAAAGGAG
CGCTTGCTGG AGGCCATCAA ACGGCCTTAC GGCATGGTTC TGGTCACCGG GCCGACGGGT
TCGGGCAAAA CCGTGTCGCT CTACACCTGC CTGAACATTT TGAATACCGC CGGCGTCAAC
ATCGCCACCG CAGAAGATCC GGCTGAAATC ACTTTGCCCG GCGTGAACCA GGTCAGCATG
AACGAGAAAG CCGGAATGAC TTTTCCGGTG GCCCTGAAGG CCTTTTTGCG CCAGGATCCG
GACATCATCA TGGTGGGCGA AATCCGCGAT GTCGAAACCG CCGACATTGC CATCAAGGCC
GCGCAGACCG GCCATCTGGT TCTGTCCACG CTGCATACCA ACGATGCGCC GACGACCCTG
ACACGCATGC GCAACATGGG CATTGCGCCT TTCAACATCG CGTCGAGCGT CATTCTGATT
ACGGCCCAGA GGCTGGCGCG GCGCCTGTGC CCGCACTGCA AAACCCCGAT AGATATTCCG
CGTGAAACAT TGCTTGAGGC CGGCTTTAAA GAGGATGAAG TGGACGGCTC ATGGACGCCC
TATCATCCGG TGGGCTGCGA CAAGTGCAAC AACGGCTACA AGGGCCGCTT GGGCATTTAC
CAGGTCATGC CAATTTCCGA GGAAATTCAG CGCATTGTCC TGCGTGATGG CAGTGCCATG
GAAATTGCAG CCCAGGCCCA GGCTGAAGGT GTCAGGAGCC TGCGCCAGTC CGGTTTGTAC
AAAGTTAAAC TGGGAATGAC TTCAATGGAA GAAATTCTGG GCTGCACCAA TGTTTGA
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| Protein sequence | MSATDTAIKP PVSMALPGLG RALIAAGKLG QKAAEEIFLK AQASRTSFIA ELTGSGAVSA
FDLAHLMSTS FAAPLVDMDA IDNQRLPKGL LDSKICLTCR IVVLGKRNNR LIVATADPSD
QGAAEKIKFS TQLGVDWVIA EYDKLSRLVD VSNASAAEAI ENIVGSDFEF DEEMADSPGV
ENTEASVSEV EDAPVVKFLQ KMLIDAFNMR ASDLHFEPFE HSYRVRFRVD GELREISSPP
VAIKEKLAAR IKVISKLDIS EKRVPQDGKM KLKIGPDRVI DFRVSTLPTM FGEKIVIRIL
DPSSAKLGID ALGYEPAEKE RLLEAIKRPY GMVLVTGPTG SGKTVSLYTC LNILNTAGVN
IATAEDPAEI TLPGVNQVSM NEKAGMTFPV ALKAFLRQDP DIIMVGEIRD VETADIAIKA
AQTGHLVLST LHTNDAPTTL TRMRNMGIAP FNIASSVILI TAQRLARRLC PHCKTPIDIP
RETLLEAGFK EDEVDGSWTP YHPVGCDKCN NGYKGRLGIY QVMPISEEIQ RIVLRDGSAM
EIAAQAQAEG VRSLRQSGLY KVKLGMTSME EILGCTNV
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