| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0577 |
|---|
| Symbol | |
|---|
| ID | 4686390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 613798 |
|---|
| End bp | 614886 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639833572 |
|---|
| Product | nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein |
|---|
| Protein accession | YP_980818 |
|---|
| Protein GI | 121603489 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC GCTTATTCAA TTCAACCCTG CTTGCCGGGC TGGGCGCCCC CGCCCTCATC
GGCCTGGGCG GCCAGGCCCG CGCGGCCGGC AAACCCACCA CCATCCGCAT CGGTTTCCCC
GGTGCCGGTA CCGGCGGTCG TCCTTTGCCC ACCTCGGGCT TTCCCGCCAA TTCGGTCTTC
CGCGGCGAGA TCGAACAGGA ATTCGCAGCA GAGGGCATCA AGATCGAGTG GAAATATTTT
GTCGGCGCCG GCCCGGCCCT CAATGAGTCC TATGCCAACG GCCTGCTGGA CTTCTGCTTC
GGCCACGGCG ACCTGCCGCT GATCGTCGGC CGCTCGACCG GCCTGAAGCA CAAGATCCTG
CTGTCATCGG GCCGGGGCGG TGACGTGTAC GTGGTGACAC CGGCATCGTC TCCTGCCAAG
TCGGTCGCTG ACCTCAAGGG CAAGACGCTG TCGGTGCAAA AAGGCACGGC AGGCCAGCTG
ACGCTGTACC GCGTGCTGGC CAAGTACGGC TTCAACGATC CGGAAAAAGA GTTCCGCATC
ATCAGCCAGA TCCGCGACGA CCGCGTGGCC TCTCTGGCCA CGGGCGACAT TGCCGGCGCC
ATCGAATCCC CGTTCGGCCT GGAGGCGCGC GGCGTGGCCA AGCGCGTGGC CGAAATCTTC
GACGATCCGG CCATCAACGC GCCCGGCTCG GTCTGGGTAG GCGAGGCCTT TGAGCAGCAG
TACCCGGACA TCGTGCAGCG CATCGTGACC CGCCTGGTGA AGGTGGCGCA CTGGAGCACC
CAGGAAGCCA ACCGCGAGAC GCAGTACCAG CTGTGGACAC GCTCGGGTAC GAGCACCTAC
ATCGACAACA AAAACAGCTG GGACCGCGTC AAGGATCTGC GCACGCGCAT CAACCCGCTG
CTGGACGACT ACTACCTGGC GGCCATCAAC AAGTCCATCG AGGAAACCAA GAAGTACAAG
CTGACCCGCA GGCCGGTCAG CCTGGACGGC TGGTTAGAGC CCAAGTACCT CAACAACGCC
CTGCGCGAGC TGAAGCTGGA GAACTACTGG CCCACGCAGG ACGCGGCGGG CAAGTTCATC
GCGGCCTGA
|
|---|
| Protein sequence | MKRRLFNSTL LAGLGAPALI GLGGQARAAG KPTTIRIGFP GAGTGGRPLP TSGFPANSVF
RGEIEQEFAA EGIKIEWKYF VGAGPALNES YANGLLDFCF GHGDLPLIVG RSTGLKHKIL
LSSGRGGDVY VVTPASSPAK SVADLKGKTL SVQKGTAGQL TLYRVLAKYG FNDPEKEFRI
ISQIRDDRVA SLATGDIAGA IESPFGLEAR GVAKRVAEIF DDPAINAPGS VWVGEAFEQQ
YPDIVQRIVT RLVKVAHWST QEANRETQYQ LWTRSGTSTY IDNKNSWDRV KDLRTRINPL
LDDYYLAAIN KSIEETKKYK LTRRPVSLDG WLEPKYLNNA LRELKLENYW PTQDAAGKFI
AA
|
|---|
| |