| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0566 |
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| Symbol | |
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| ID | 4688997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 598299 |
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| End bp | 599864 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639833561 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_980807 |
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| Protein GI | 121603478 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACACC AGCAAATGGA AGTAGGAGGA GAAGTAGGGG AAGTGGGGAG AGGGCAACGC
GGGCGCCAGC ACTGTCAAGG CCGCTGGCGC CTGCGTCTGT CTTGGGCGGG ATGCACAGGC
CTGATGGCGC TGGCCCTGGC CGCCTGCGGC AGCGTCGCGC CGCCCCCGGT GGCGCTAAGC
GAGGCACCCC CCGCATGGCA GACGCCGGCT GACCTGGCAG CGGCGCAGGG CGCCGCGCCC
TGGCGCCCGG CCCAGCCGGG CGACAGCCTC GACAAGGGCG CGTGGTGGCG CTTGTTCAAT
GACCCCGGCC TGGACGCCCT GCAGCAGCAA GCCCGCCAGG CCAGCCCGAG CCTGCAGGTG
GCCGCCGCCC GTCTGCGCCA GGCTCATACC CTGGTGGACA TCGCCGGGGC ATCCAGCCTG
CCGCGCGTCG ATGCAGGCTT GCGCGGCACG CGCACCGGCA CCTCCGCCAA CCGGCCAGCG
GCCACGGCGG GCGCCCAAGC CAGCGCGTCC GTGCAGAACG ATTTCGTGCT GAGCAGCACG
GTCAGCTACG AGCTGGACCT GTTCGGACGC CAGCGCCACG AGCAGCAGGC CGCGCTGGCT
TTCGAGCAGC AGGCGCAAGC GGACCAGCTG AACGCGCAAC TGGTGCTCAG CGCCGATCTG
GCGGCGTTTT ATTTCACGCT GCGCTCGCTC GATGCCGAAA TCGCGGTGGT CGAGCAGGGC
CTGCAGGTCC AGGGGCGCGC CGCTGATTTA CTCGCAGCAC GCCACGAGGG CGGCGCCGCT
TCCGGCCTGG ACCGGGCGCA GCAGCAGGCC CAGTTTGACG CCACGCGCAC GCAGCTAACC
TTATTGCGCA AACAGCGCGG GCAGCTCGAA CACGCGCTGG CCACGCTGGT CGGCACGCCG
GCCAGCCAGT TCACGCTGCC GGTGGCGGCC CTGCCCGCAG GCGTTCCGGG CCTGCCGGTG
GCCCTGCCGT CCGAGGTGCT GCAGCGCCGG CCCGACATCG CCGCCGCAGA GCGCGCCGTG
GCCGTGGCCA ATGCCCAGCT TGGCTTGGCC AAAGCAGCCT GGTTTCCCAG CCTGACCTTG
AGCGCCTCGG GCGGCTGGGA AGCGAAAAAC ATCGCCAGCC TGATCGACGC ACCCAGCCTG
CTGTGGGCAT TGGGCGGCAG CCTGACGCAG GCCGTGTTCG ATGGTGGGCG CCTGCGCGCC
AGAGAAGAAC AGGCCAGAGC CGGCCAGGAA CTGGCCGCAG CCAGCTACCG CCAGGTGGTG
CTGCGCGCGC TGCAGGAGGT GGAGGACGGC CTGCTGGCGC TCAACGCCCT GGCCAGCGCC
CAGTCCCAGT CCCAGGCCGC CAGCGCCAGC GCCCAGCGGG TGCTGGACAT CGCGCAGGAC
CGCTATGCGG GCGGCCTGTC CACTTACCTC GACGTGGTCA CCGCCCAGCA GAACGTGCTG
ACCAACCAGC GCCTGTCCAG CCAGCTGCGC GGCCAGCAGC TGCAGGCCAC GGCCTACCTG
GTCAAGGCGC TGGGCGGCGG CTGGCAGCCC GGCGAACTGG AGCAGGCCTT GCTTGGCCAG
CGCTGA
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| Protein sequence | MRHQQMEVGG EVGEVGRGQR GRQHCQGRWR LRLSWAGCTG LMALALAACG SVAPPPVALS
EAPPAWQTPA DLAAAQGAAP WRPAQPGDSL DKGAWWRLFN DPGLDALQQQ ARQASPSLQV
AAARLRQAHT LVDIAGASSL PRVDAGLRGT RTGTSANRPA ATAGAQASAS VQNDFVLSST
VSYELDLFGR QRHEQQAALA FEQQAQADQL NAQLVLSADL AAFYFTLRSL DAEIAVVEQG
LQVQGRAADL LAARHEGGAA SGLDRAQQQA QFDATRTQLT LLRKQRGQLE HALATLVGTP
ASQFTLPVAA LPAGVPGLPV ALPSEVLQRR PDIAAAERAV AVANAQLGLA KAAWFPSLTL
SASGGWEAKN IASLIDAPSL LWALGGSLTQ AVFDGGRLRA REEQARAGQE LAAASYRQVV
LRALQEVEDG LLALNALASA QSQSQAASAS AQRVLDIAQD RYAGGLSTYL DVVTAQQNVL
TNQRLSSQLR GQQLQATAYL VKALGGGWQP GELEQALLGQ R
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